miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28363 3' -57.3 NC_005946.1 + 1048 0.67 0.753314
Target:  5'- --uGGACC-GUCUGGCC-C-GUGACCg -3'
miRNA:   3'- gcuCCUGGuCAGACUGGuGcCGCUGG- -5'
28363 3' -57.3 NC_005946.1 + 2397 0.69 0.643087
Target:  5'- gGuGGACCAGUUUGuguCCAuguuCGGCGAg- -3'
miRNA:   3'- gCuCCUGGUCAGACu--GGU----GCCGCUgg -5'
28363 3' -57.3 NC_005946.1 + 4334 0.69 0.653323
Target:  5'- gGAGGGCCaccccgcgugguAGUUUaguucGACCGCGGaCGACa -3'
miRNA:   3'- gCUCCUGG------------UCAGA-----CUGGUGCC-GCUGg -5'
28363 3' -57.3 NC_005946.1 + 8864 0.68 0.683898
Target:  5'- cCGGGcuCCAGUUUgGGCCACgaaaacggaGGCGGCCu -3'
miRNA:   3'- -GCUCcuGGUCAGA-CUGGUG---------CCGCUGG- -5'
28363 3' -57.3 NC_005946.1 + 14416 0.73 0.410204
Target:  5'- aGAGGGCCaaggaaaagGGUCUGACCAgaGGCugcauaguccuGGCCa -3'
miRNA:   3'- gCUCCUGG---------UCAGACUGGUg-CCG-----------CUGG- -5'
28363 3' -57.3 NC_005946.1 + 15924 0.7 0.591931
Target:  5'- cCGAGG--CGGUCgUGGCCAUGGaGGCCg -3'
miRNA:   3'- -GCUCCugGUCAG-ACUGGUGCCgCUGG- -5'
28363 3' -57.3 NC_005946.1 + 20582 0.7 0.602132
Target:  5'- cCGAGcaGACUguGGUCgugucgcagaUGACCACGGCGcugGCCa -3'
miRNA:   3'- -GCUC--CUGG--UCAG----------ACUGGUGCCGC---UGG- -5'
28363 3' -57.3 NC_005946.1 + 22181 0.67 0.743644
Target:  5'- --cGGGCUGGcugccCUGGCCGCGGCcgcuccccuGACCg -3'
miRNA:   3'- gcuCCUGGUCa----GACUGGUGCCG---------CUGG- -5'
28363 3' -57.3 NC_005946.1 + 22563 1.12 0.001059
Target:  5'- uCGAGGACCAGUCUGACCACGGCGACCg -3'
miRNA:   3'- -GCUCCUGGUCAGACUGGUGCCGCUGG- -5'
28363 3' -57.3 NC_005946.1 + 36375 0.71 0.531569
Target:  5'- cCGGGaGACuuccaCAGUCUcuugaggugGGCCGCGGCGGCg -3'
miRNA:   3'- -GCUC-CUG-----GUCAGA---------CUGGUGCCGCUGg -5'
28363 3' -57.3 NC_005946.1 + 41498 0.66 0.808763
Target:  5'- --uGGACCuGUgccGCCACGGgGACCc -3'
miRNA:   3'- gcuCCUGGuCAgacUGGUGCCgCUGG- -5'
28363 3' -57.3 NC_005946.1 + 42150 0.67 0.733877
Target:  5'- aCGGGGACC-GUCUGcgcguCCAUGuCGGCUc -3'
miRNA:   3'- -GCUCCUGGuCAGACu----GGUGCcGCUGG- -5'
28363 3' -57.3 NC_005946.1 + 42270 0.68 0.714087
Target:  5'- cCGcGGGACCAGUCUcACCAgCGG-GcCCa -3'
miRNA:   3'- -GC-UCCUGGUCAGAcUGGU-GCCgCuGG- -5'
28363 3' -57.3 NC_005946.1 + 49060 0.68 0.673738
Target:  5'- aGGGGAgCCAGUCaGACCucaGCGGaGGCa -3'
miRNA:   3'- gCUCCU-GGUCAGaCUGG---UGCCgCUGg -5'
28363 3' -57.3 NC_005946.1 + 49364 0.66 0.790829
Target:  5'- nCGAGGACCgGGUCgUGAgUCAggaGGCaGGCCu -3'
miRNA:   3'- -GCUCCUGG-UCAG-ACU-GGUg--CCG-CUGG- -5'
28363 3' -57.3 NC_005946.1 + 49397 0.69 0.612356
Target:  5'- gGAGGACCGccGUCgGACCAagagggguCGGgGACg -3'
miRNA:   3'- gCUCCUGGU--CAGaCUGGU--------GCCgCUGg -5'
28363 3' -57.3 NC_005946.1 + 56109 0.75 0.322022
Target:  5'- gGAGGGCCAGUUuccagacgccuUGACCAUGGCccucaGGCUc -3'
miRNA:   3'- gCUCCUGGUCAG-----------ACUGGUGCCG-----CUGG- -5'
28363 3' -57.3 NC_005946.1 + 59759 0.66 0.826054
Target:  5'- gGuGGACUugAGcUUGGCCACaGCGGCUg -3'
miRNA:   3'- gCuCCUGG--UCaGACUGGUGcCGCUGG- -5'
28363 3' -57.3 NC_005946.1 + 61174 0.68 0.704082
Target:  5'- gGGGGACC-GUCcugGACCccgUGGaCGACCu -3'
miRNA:   3'- gCUCCUGGuCAGa--CUGGu--GCC-GCUGG- -5'
28363 3' -57.3 NC_005946.1 + 61249 0.78 0.204616
Target:  5'- aGAGGACCGGcCUGugCcUGGCGGCg -3'
miRNA:   3'- gCUCCUGGUCaGACugGuGCCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.