Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28363 | 3' | -57.3 | NC_005946.1 | + | 42270 | 0.68 | 0.714087 |
Target: 5'- cCGcGGGACCAGUCUcACCAgCGG-GcCCa -3' miRNA: 3'- -GC-UCCUGGUCAGAcUGGU-GCCgCuGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 61174 | 0.68 | 0.704082 |
Target: 5'- gGGGGACC-GUCcugGACCccgUGGaCGACCu -3' miRNA: 3'- gCUCCUGGuCAGa--CUGGu--GCC-GCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 8864 | 0.68 | 0.683898 |
Target: 5'- cCGGGcuCCAGUUUgGGCCACgaaaacggaGGCGGCCu -3' miRNA: 3'- -GCUCcuGGUCAGA-CUGGUG---------CCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 49060 | 0.68 | 0.673738 |
Target: 5'- aGGGGAgCCAGUCaGACCucaGCGGaGGCa -3' miRNA: 3'- gCUCCU-GGUCAGaCUGG---UGCCgCUGg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 4334 | 0.69 | 0.653323 |
Target: 5'- gGAGGGCCaccccgcgugguAGUUUaguucGACCGCGGaCGACa -3' miRNA: 3'- gCUCCUGG------------UCAGA-----CUGGUGCC-GCUGg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 63792 | 0.69 | 0.6523 |
Target: 5'- uGGGGACCAggagcuugcacauGUUUG-CCACGGCcaggagccacGACCc -3' miRNA: 3'- gCUCCUGGU-------------CAGACuGGUGCCG----------CUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 2397 | 0.69 | 0.643087 |
Target: 5'- gGuGGACCAGUUUGuguCCAuguuCGGCGAg- -3' miRNA: 3'- gCuCCUGGUCAGACu--GGU----GCCGCUgg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 49397 | 0.69 | 0.612356 |
Target: 5'- gGAGGACCGccGUCgGACCAagagggguCGGgGACg -3' miRNA: 3'- gCUCCUGGU--CAGaCUGGU--------GCCgCUGg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 67732 | 0.7 | 0.602132 |
Target: 5'- -cAGGuCCAGggccACCACGGUGACCu -3' miRNA: 3'- gcUCCuGGUCagacUGGUGCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 20582 | 0.7 | 0.602132 |
Target: 5'- cCGAGcaGACUguGGUCgugucgcagaUGACCACGGCGcugGCCa -3' miRNA: 3'- -GCUC--CUGG--UCAG----------ACUGGUGCCGC---UGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 15924 | 0.7 | 0.591931 |
Target: 5'- cCGAGG--CGGUCgUGGCCAUGGaGGCCg -3' miRNA: 3'- -GCUCCugGUCAG-ACUGGUGCCgCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 36375 | 0.71 | 0.531569 |
Target: 5'- cCGGGaGACuuccaCAGUCUcuugaggugGGCCGCGGCGGCg -3' miRNA: 3'- -GCUC-CUG-----GUCAGA---------CUGGUGCCGCUGg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 79668 | 0.72 | 0.483031 |
Target: 5'- uGGcGACCAuGUCgugcugGACCugGGCGAUCu -3' miRNA: 3'- gCUcCUGGU-CAGa-----CUGGugCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 81844 | 0.73 | 0.410204 |
Target: 5'- aCGAacuGGaACCuGUCuUGcCCGCGGCGACCc -3' miRNA: 3'- -GCU---CC-UGGuCAG-ACuGGUGCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 14416 | 0.73 | 0.410204 |
Target: 5'- aGAGGGCCaaggaaaagGGUCUGACCAgaGGCugcauaguccuGGCCa -3' miRNA: 3'- gCUCCUGG---------UCAGACUGGUg-CCG-----------CUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 56109 | 0.75 | 0.322022 |
Target: 5'- gGAGGGCCAGUUuccagacgccuUGACCAUGGCccucaGGCUc -3' miRNA: 3'- gCUCCUGGUCAG-----------ACUGGUGCCG-----CUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 74528 | 0.77 | 0.242867 |
Target: 5'- cCGAGGguGCCuccCUGACgGCGGCGGCCu -3' miRNA: 3'- -GCUCC--UGGucaGACUGgUGCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 75818 | 0.78 | 0.231367 |
Target: 5'- gCGAGGACCAcGUCcugccgGGCUAUGGCGcCCg -3' miRNA: 3'- -GCUCCUGGU-CAGa-----CUGGUGCCGCuGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 61249 | 0.78 | 0.204616 |
Target: 5'- aGAGGACCGGcCUGugCcUGGCGGCg -3' miRNA: 3'- gCUCCUGGUCaGACugGuGCCGCUGg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 22563 | 1.12 | 0.001059 |
Target: 5'- uCGAGGACCAGUCUGACCACGGCGACCg -3' miRNA: 3'- -GCUCCUGGUCAGACUGGUGCCGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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