Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28364 | 3' | -58.1 | NC_005946.1 | + | 26883 | 0.66 | 0.706638 |
|
Target: 5'- ----gCCUGGUGacccugcccGGGUUGGCGGCGGu -3' miRNA: 3'- cccaaGGACCAC---------CCUAGCCGUCGCUu -5' |
|||||||
| 28364 | 3' | -58.1 | NC_005946.1 | + | 36278 | 0.66 | 0.706638 |
|
Target: 5'- aGGUg--UGGUGGGcucCGGCGGCGGu -3' miRNA: 3'- cCCAaggACCACCCua-GCCGUCGCUu -5' |
|||||||
| 28364 | 3' | -58.1 | NC_005946.1 | + | 22940 | 0.77 | 0.196414 |
|
Target: 5'- aGGGUUCCUGGUGGGAUCccugcaaaaGGCcucGCa-- -3' miRNA: 3'- -CCCAAGGACCACCCUAG---------CCGu--CGcuu -5' |
|||||||
| 28364 | 3' | -58.1 | NC_005946.1 | + | 22448 | 0.79 | 0.14052 |
|
Target: 5'- aGGGUUCCUGGUGGGAUCccUAGCa-- -3' miRNA: 3'- -CCCAAGGACCACCCUAGccGUCGcuu -5' |
|||||||
| 28364 | 3' | -58.1 | NC_005946.1 | + | 22238 | 0.81 | 0.098754 |
|
Target: 5'- aGGGUUCCUGGUGGGAUCccuagcaaacucugGGCA-CGGAc -3' miRNA: 3'- -CCCAAGGACCACCCUAG--------------CCGUcGCUU- -5' |
|||||||
| 28364 | 3' | -58.1 | NC_005946.1 | + | 22781 | 1.08 | 0.001349 |
|
Target: 5'- cGGGUUCCUGGUGGGAUCGGCAGCGAAc -3' miRNA: 3'- -CCCAAGGACCACCCUAGCCGUCGCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home