miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28364 5' -60.7 NC_005946.1 + 97868 0.66 0.669734
Target:  5'- gGCUCCgUCCUGGcCUguGGCC-GGGGCg -3'
miRNA:   3'- gUGAGG-AGGGCCaGG--CUGGaCCCUGg -5'
28364 5' -60.7 NC_005946.1 + 24052 0.66 0.649731
Target:  5'- aGCUCCcuuUCCCcaccGUCCGAcgucCCUGGGuacgaACCu -3'
miRNA:   3'- gUGAGG---AGGGc---CAGGCU----GGACCC-----UGG- -5'
28364 5' -60.7 NC_005946.1 + 22465 0.66 0.619645
Target:  5'- aUugUCCUgCCGGUCCuaggguuCCUgguGGGAUCc -3'
miRNA:   3'- -GugAGGAgGGCCAGGcu-----GGA---CCCUGG- -5'
28364 5' -60.7 NC_005946.1 + 10244 0.67 0.579689
Target:  5'- -cCUCCUCuacgCUGGUCaCcGCCgGGGACCu -3'
miRNA:   3'- guGAGGAG----GGCCAG-GcUGGaCCCUGG- -5'
28364 5' -60.7 NC_005946.1 + 61862 0.68 0.550076
Target:  5'- -cCUCCUCCCGacGcCCuGCCcaGGGACCu -3'
miRNA:   3'- guGAGGAGGGC--CaGGcUGGa-CCCUGG- -5'
28364 5' -60.7 NC_005946.1 + 35613 0.68 0.520945
Target:  5'- aCACgg-UCCCGGcCgCGGCCUGGGcuuCCa -3'
miRNA:   3'- -GUGaggAGGGCCaG-GCUGGACCCu--GG- -5'
28364 5' -60.7 NC_005946.1 + 14994 0.69 0.492436
Target:  5'- aGC-CCUCaaaaCGGUCCGACCccauguuggagGGGGCg -3'
miRNA:   3'- gUGaGGAGg---GCCAGGCUGGa----------CCCUGg -5'
28364 5' -60.7 NC_005946.1 + 62094 0.69 0.471994
Target:  5'- uCAgaCCUCaCCagaaaggGGUCCugaaggaGGCCUGGGGCCa -3'
miRNA:   3'- -GUgaGGAG-GG-------CCAGG-------CUGGACCCUGG- -5'
28364 5' -60.7 NC_005946.1 + 67996 0.69 0.446614
Target:  5'- gCACgUUgUagCCGGUgCGACCUGGGGCUu -3'
miRNA:   3'- -GUG-AGgAg-GGCCAgGCUGGACCCUGG- -5'
28364 5' -60.7 NC_005946.1 + 28760 0.7 0.403266
Target:  5'- uGCUCCUUCUGGUa-GGCCaUGGuGGCCu -3'
miRNA:   3'- gUGAGGAGGGCCAggCUGG-ACC-CUGG- -5'
28364 5' -60.7 NC_005946.1 + 74501 0.72 0.317838
Target:  5'- -cCUCCUCCuCGGcCuCGACCUGGuuGACUg -3'
miRNA:   3'- guGAGGAGG-GCCaG-GCUGGACC--CUGG- -5'
28364 5' -60.7 NC_005946.1 + 13764 0.73 0.28835
Target:  5'- ---gCCUUCCaGUCCGacgcauacgccucgGCCUGGGACCa -3'
miRNA:   3'- gugaGGAGGGcCAGGC--------------UGGACCCUGG- -5'
28364 5' -60.7 NC_005946.1 + 22746 1.11 0.00063
Target:  5'- aCACUCCUCCCGGUCCGACCUGGGACCu -3'
miRNA:   3'- -GUGAGGAGGGCCAGGCUGGACCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.