miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28365 3' -58.3 NC_005946.1 + 35940 0.67 0.690656
Target:  5'- cGGCCGCcgCCaGGGC-CCUCGcAGCgGg -3'
miRNA:   3'- -CCGGCGa-GG-CCUGcGGAGUuUCGaCa -5'
28365 3' -58.3 NC_005946.1 + 35463 0.67 0.639213
Target:  5'- cGGCCGCUgUGGACuCUgggUCAGAcGCUGc -3'
miRNA:   3'- -CCGGCGAgGCCUGcGG---AGUUU-CGACa -5'
28365 3' -58.3 NC_005946.1 + 58102 0.68 0.628873
Target:  5'- uGGCCGCggcgCCGGGCaugccugcCCUCAAGaccugcucGCUGa -3'
miRNA:   3'- -CCGGCGa---GGCCUGc-------GGAGUUU--------CGACa -5'
28365 3' -58.3 NC_005946.1 + 20870 0.68 0.587618
Target:  5'- aGGCCGC-CgCGGugGCCcugagggcaAAGGCUGc -3'
miRNA:   3'- -CCGGCGaG-GCCugCGGag-------UUUCGACa -5'
28365 3' -58.3 NC_005946.1 + 54248 0.69 0.536832
Target:  5'- aGGCCGCUCUaGuccaACGCCUCAuagAGGCa-- -3'
miRNA:   3'- -CCGGCGAGGcC----UGCGGAGU---UUCGaca -5'
28365 3' -58.3 NC_005946.1 + 21911 0.69 0.526846
Target:  5'- gGGCCGUcaCCGGACugguCCUCAAcgucGCUGUg -3'
miRNA:   3'- -CCGGCGa-GGCCUGc---GGAGUUu---CGACA- -5'
28365 3' -58.3 NC_005946.1 + 43712 0.7 0.468577
Target:  5'- uGCCaGCUCCGGcuUGCCUCc--GCUGUa -3'
miRNA:   3'- cCGG-CGAGGCCu-GCGGAGuuuCGACA- -5'
28365 3' -58.3 NC_005946.1 + 68950 0.71 0.459183
Target:  5'- gGGCgGCUCUGGugGuCCUCAgcauccuuuGAGCg-- -3'
miRNA:   3'- -CCGgCGAGGCCugC-GGAGU---------UUCGaca -5'
28365 3' -58.3 NC_005946.1 + 23114 0.75 0.256197
Target:  5'- --aCGCcCCuGGCGCCUCAAAGCUGUu -3'
miRNA:   3'- ccgGCGaGGcCUGCGGAGUUUCGACA- -5'
28365 3' -58.3 NC_005946.1 + 23156 1.08 0.001267
Target:  5'- uGGCCGCUCCGGACGCCUCAAAGCUGUu -3'
miRNA:   3'- -CCGGCGAGGCCUGCGGAGUUUCGACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.