miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28366 5' -59 NC_005946.1 + 40284 0.66 0.73617
Target:  5'- gGGCUcggACGG-C-CUGaCGGCCU-CUCCg -3'
miRNA:   3'- -CCGG---UGCCaGaGAC-GCCGGAaGAGGg -5'
28366 5' -59 NC_005946.1 + 58515 0.66 0.716513
Target:  5'- aGUCACGGaggUUGUGGCCUacgacauaaacaUCUCUCa -3'
miRNA:   3'- cCGGUGCCagaGACGCCGGA------------AGAGGG- -5'
28366 5' -59 NC_005946.1 + 48031 0.66 0.716513
Target:  5'- aGGCCugGGUgg--GCGGCCUcCUUg- -3'
miRNA:   3'- -CCGGugCCAgagaCGCCGGAaGAGgg -5'
28366 5' -59 NC_005946.1 + 21256 0.66 0.706573
Target:  5'- uGGCCACcGUCUUUGagaCGGCagaCUCUCa -3'
miRNA:   3'- -CCGGUGcCAGAGAC---GCCGgaaGAGGG- -5'
28366 5' -59 NC_005946.1 + 30458 0.66 0.69657
Target:  5'- aGCC-CGGUCgCUGCGcUCUccaCUCCCa -3'
miRNA:   3'- cCGGuGCCAGaGACGCcGGAa--GAGGG- -5'
28366 5' -59 NC_005946.1 + 79235 0.66 0.69657
Target:  5'- cGCgGCGGcCUCUGCGacuauggacGCCagcUCUCCa -3'
miRNA:   3'- cCGgUGCCaGAGACGC---------CGGa--AGAGGg -5'
28366 5' -59 NC_005946.1 + 80481 0.66 0.69657
Target:  5'- aGCCucaACGGUCcagaccCUGaGGCUgUCUCCCa -3'
miRNA:   3'- cCGG---UGCCAGa-----GACgCCGGaAGAGGG- -5'
28366 5' -59 NC_005946.1 + 34771 0.67 0.666275
Target:  5'- cGGCgGCGGgguagGgGGaCUUUCUCCCa -3'
miRNA:   3'- -CCGgUGCCagagaCgCC-GGAAGAGGG- -5'
28366 5' -59 NC_005946.1 + 59961 0.67 0.656111
Target:  5'- cGGcCCugGGUCUCgccccCGGa--UCUCCCu -3'
miRNA:   3'- -CC-GGugCCAGAGac---GCCggaAGAGGG- -5'
28366 5' -59 NC_005946.1 + 22914 0.67 0.635732
Target:  5'- aGGCCucgcACGuGUCgucgUCUGU-GCCUUCUCCg -3'
miRNA:   3'- -CCGG----UGC-CAG----AGACGcCGGAAGAGGg -5'
28366 5' -59 NC_005946.1 + 4488 0.67 0.625535
Target:  5'- aGGCCGCGGccCUCaUGaCGuCCUUUUCCg -3'
miRNA:   3'- -CCGGUGCCa-GAG-AC-GCcGGAAGAGGg -5'
28366 5' -59 NC_005946.1 + 22418 0.67 0.624516
Target:  5'- uGGaCACGGgcuagcCUCcGCGGCCUcugccggugacugUCUCCUu -3'
miRNA:   3'- -CCgGUGCCa-----GAGaCGCCGGA-------------AGAGGG- -5'
28366 5' -59 NC_005946.1 + 42400 0.69 0.534843
Target:  5'- uGUCGgGGUCUUUG-GGaCCUcugUCUCCCg -3'
miRNA:   3'- cCGGUgCCAGAGACgCC-GGA---AGAGGG- -5'
28366 5' -59 NC_005946.1 + 94190 0.69 0.525007
Target:  5'- aGGCCAgGGUCUCUGaGGUUaUCgCCg -3'
miRNA:   3'- -CCGGUgCCAGAGACgCCGGaAGaGGg -5'
28366 5' -59 NC_005946.1 + 36347 0.7 0.495935
Target:  5'- gGGCCGCGG-Cg--GCGGCCcaCUCUg -3'
miRNA:   3'- -CCGGUGCCaGagaCGCCGGaaGAGGg -5'
28366 5' -59 NC_005946.1 + 8850 0.7 0.490207
Target:  5'- gGGCCACGaaaacggagGCGGCCUggucaccgUCUCCCc -3'
miRNA:   3'- -CCGGUGCcagaga---CGCCGGA--------AGAGGG- -5'
28366 5' -59 NC_005946.1 + 35613 0.7 0.486405
Target:  5'- --aCACGGUCccggCcGCGGCCUgggCUUCCa -3'
miRNA:   3'- ccgGUGCCAGa---GaCGCCGGAa--GAGGG- -5'
28366 5' -59 NC_005946.1 + 65305 0.71 0.431198
Target:  5'- gGGCCACc-UCUCUGCaGCCgUgUCCCu -3'
miRNA:   3'- -CCGGUGccAGAGACGcCGGaAgAGGG- -5'
28366 5' -59 NC_005946.1 + 48623 0.71 0.413624
Target:  5'- aGGCCAUGGccgcccUCUCcuCGGCCUgCUCCUc -3'
miRNA:   3'- -CCGGUGCC------AGAGacGCCGGAaGAGGG- -5'
28366 5' -59 NC_005946.1 + 23690 0.74 0.303091
Target:  5'- uGGCCuggaGGUagcacuuugugacCUUUGCGGCCUUUUCCa -3'
miRNA:   3'- -CCGGug--CCA-------------GAGACGCCGGAAGAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.