miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28367 5' -53.3 NC_005946.1 + 72600 0.66 0.928392
Target:  5'- gAGgGAGAUAcaccuccucGGGUGCCagggaagguUCGUGAGGAGg -3'
miRNA:   3'- -UUgUUCUAU---------UCCGUGG---------GGCACUCCUC- -5'
28367 5' -53.3 NC_005946.1 + 79935 0.66 0.922703
Target:  5'- gGACGcc--GAGGCGCCCaCGgcgGGGGGGa -3'
miRNA:   3'- -UUGUucuaUUCCGUGGG-GCa--CUCCUC- -5'
28367 5' -53.3 NC_005946.1 + 44140 0.67 0.866971
Target:  5'- cAugAAGGUGucGGUgauguuuACCCCGUGGuGGAGg -3'
miRNA:   3'- -UugUUCUAUu-CCG-------UGGGGCACU-CCUC- -5'
28367 5' -53.3 NC_005946.1 + 55654 0.68 0.851551
Target:  5'- cAACGGGAcggUGGGGUugaggAgCCCGUGAGGGu -3'
miRNA:   3'- -UUGUUCU---AUUCCG-----UgGGGCACUCCUc -5'
28367 5' -53.3 NC_005946.1 + 71982 0.68 0.82559
Target:  5'- cAGCGAGGUGGGuGCcuCCCCGacuggggccUGAGGAa -3'
miRNA:   3'- -UUGUUCUAUUC-CGu-GGGGC---------ACUCCUc -5'
28367 5' -53.3 NC_005946.1 + 71741 0.69 0.77852
Target:  5'- --uGGGGccggGAGGCaACCCCaUGAGGAGg -3'
miRNA:   3'- uugUUCUa---UUCCG-UGGGGcACUCCUC- -5'
28367 5' -53.3 NC_005946.1 + 23636 0.7 0.748436
Target:  5'- uGCAAGAgucgcAGGCcccuGCCCCGgcggUGAGGGGu -3'
miRNA:   3'- uUGUUCUau---UCCG----UGGGGC----ACUCCUC- -5'
28367 5' -53.3 NC_005946.1 + 3117 0.7 0.726748
Target:  5'- cGGCGAGA--GGGCACUCCugugggugucgcuGUGAGGAc -3'
miRNA:   3'- -UUGUUCUauUCCGUGGGG-------------CACUCCUc -5'
28367 5' -53.3 NC_005946.1 + 8930 0.71 0.696158
Target:  5'- uGCAGGGU-GGGCugCCUGuUGAGGGc -3'
miRNA:   3'- uUGUUCUAuUCCGugGGGC-ACUCCUc -5'
28367 5' -53.3 NC_005946.1 + 25846 1.07 0.00372
Target:  5'- aAACAAGAUAAGGCACCCCGUGAGGAGg -3'
miRNA:   3'- -UUGUUCUAUUCCGUGGGGCACUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.