miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28368 3' -57.7 NC_005946.1 + 21604 0.66 0.721857
Target:  5'- --cCCUGUCgGCCGCCa-UCUCCAAc -3'
miRNA:   3'- auaGGACAGaCGGUGGcgGGAGGUUu -5'
28368 3' -57.7 NC_005946.1 + 21749 0.66 0.711533
Target:  5'- --cCCUGUUUGUCAUgGCCCUgagcgcgagccCCGAAu -3'
miRNA:   3'- auaGGACAGACGGUGgCGGGA-----------GGUUU- -5'
28368 3' -57.7 NC_005946.1 + 96941 0.66 0.701135
Target:  5'- cGUC---UCUGCCACUGUCCUCUGAc -3'
miRNA:   3'- aUAGgacAGACGGUGGCGGGAGGUUu -5'
28368 3' -57.7 NC_005946.1 + 48418 0.66 0.690675
Target:  5'- gAUCCUGccCUGCCucCUGgCCUCCGc- -3'
miRNA:   3'- aUAGGACa-GACGGu-GGCgGGAGGUuu -5'
28368 3' -57.7 NC_005946.1 + 19596 0.66 0.690675
Target:  5'- --aCCUGUCUGCCGCagcgucuguccuUGCCuCUgCCGAc -3'
miRNA:   3'- auaGGACAGACGGUG------------GCGG-GA-GGUUu -5'
28368 3' -57.7 NC_005946.1 + 9621 0.66 0.680163
Target:  5'- cGUCCUcGUCauCCGCCGCcuccgCCUCCAGGa -3'
miRNA:   3'- aUAGGA-CAGacGGUGGCG-----GGAGGUUU- -5'
28368 3' -57.7 NC_005946.1 + 69938 0.66 0.669608
Target:  5'- gGUgCcGUCUGCCACCGucucCCCUCUc-- -3'
miRNA:   3'- aUAgGaCAGACGGUGGC----GGGAGGuuu -5'
28368 3' -57.7 NC_005946.1 + 68179 0.68 0.595323
Target:  5'- gGUCCa--CUGCCACgaCGCCCUCCc-- -3'
miRNA:   3'- aUAGGacaGACGGUG--GCGGGAGGuuu -5'
28368 3' -57.7 NC_005946.1 + 27554 0.68 0.563753
Target:  5'- cAUCCUcGUCUGUCGCCGaguCCUCUu-- -3'
miRNA:   3'- aUAGGA-CAGACGGUGGCg--GGAGGuuu -5'
28368 3' -57.7 NC_005946.1 + 34212 0.69 0.492183
Target:  5'- gGUCCUGUUggaucccgUGCCcccuaCGUCCUCCAGAa -3'
miRNA:   3'- aUAGGACAG--------ACGGug---GCGGGAGGUUU- -5'
28368 3' -57.7 NC_005946.1 + 26238 1.04 0.002033
Target:  5'- cUAUCCUGUCUGCCACCGCCCUCCAAAa -3'
miRNA:   3'- -AUAGGACAGACGGUGGCGGGAGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.