miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28369 3' -53.3 NC_005946.1 + 86291 0.66 0.926633
Target:  5'- aCUUGACGACCaugGUCUUuauaacgUUUGGcuuaUCUCCc -3'
miRNA:   3'- -GAACUGCUGGa--CGGGA-------AAGCC----AGAGG- -5'
28369 3' -53.3 NC_005946.1 + 22512 0.66 0.937657
Target:  5'- --cGGCGcacucuGCCUcgaggGCCCUguaagUCGGUcCUCCu -3'
miRNA:   3'- gaaCUGC------UGGA-----CGGGAa----AGCCA-GAGG- -5'
28369 3' -53.3 NC_005946.1 + 47781 0.66 0.947113
Target:  5'- uCUUGugGGCCcuguugaGCUCg-UCGGUCUgCa -3'
miRNA:   3'- -GAACugCUGGa------CGGGaaAGCCAGAgG- -5'
28369 3' -53.3 NC_005946.1 + 98189 0.66 0.951465
Target:  5'- --gGGCGGCCUGCaCCUg-----CUCCa -3'
miRNA:   3'- gaaCUGCUGGACG-GGAaagccaGAGG- -5'
28369 3' -53.3 NC_005946.1 + 32509 0.66 0.951465
Target:  5'- uCUUGACGuCCuUGUCCUUgaGGUgCUUCu -3'
miRNA:   3'- -GAACUGCuGG-ACGGGAAagCCA-GAGG- -5'
28369 3' -53.3 NC_005946.1 + 40271 0.7 0.802973
Target:  5'- -cUGACGGCCUcuccgGCaaaCUgcuuauaguaguugUCGGUCUCCu -3'
miRNA:   3'- gaACUGCUGGA-----CGg--GAa-------------AGCCAGAGG- -5'
28369 3' -53.3 NC_005946.1 + 78959 0.74 0.552741
Target:  5'- gCUUGGCGuACCUGCUCagUauGUCUCCc -3'
miRNA:   3'- -GAACUGC-UGGACGGGaaAgcCAGAGG- -5'
28369 3' -53.3 NC_005946.1 + 89844 0.76 0.462561
Target:  5'- --cGAUGACCgUGCCCccgUCaGUCUCCa -3'
miRNA:   3'- gaaCUGCUGG-ACGGGaa-AGcCAGAGG- -5'
28369 3' -53.3 NC_005946.1 + 28912 1.13 0.002196
Target:  5'- aCUUGACGACCUGCCCUUUCGGUCUCCu -3'
miRNA:   3'- -GAACUGCUGGACGGGAAAGCCAGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.