Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28371 | 5' | -56.9 | NC_005946.1 | + | 47409 | 0.69 | 0.684921 |
Target: 5'- -gCGcCGGCCACuCugGGGCGggcuuGAACCc -3' miRNA: 3'- gaGU-GCCGGUG-GugCCUGCac---CUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 35943 | 0.69 | 0.67779 |
Target: 5'- -cCACGGCCGCCgccagggcccucgcaGCGGgACGUuuGGAaguccugGCCg -3' miRNA: 3'- gaGUGCCGGUGG---------------UGCC-UGCA--CCU-------UGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 67727 | 0.69 | 0.654248 |
Target: 5'- -cCAgGGCCACCACGGugaccuCGggcugaGGGACg -3' miRNA: 3'- gaGUgCCGGUGGUGCCu-----GCa-----CCUUGg -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 70617 | 0.7 | 0.627527 |
Target: 5'- cCUgAUGGCCGCUauguaGCGGACcauuacccccaagauGUGGAGCg -3' miRNA: 3'- -GAgUGCCGGUGG-----UGCCUG---------------CACCUUGg -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 82298 | 0.7 | 0.602878 |
Target: 5'- --gACGGCCACCcCGGuCaacaGGAGCCa -3' miRNA: 3'- gagUGCCGGUGGuGCCuGca--CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 44545 | 0.71 | 0.57124 |
Target: 5'- cCUCACGGCCcUgGCGGugugagGCGUcuugaggGGAGCCu -3' miRNA: 3'- -GAGUGCCGGuGgUGCC------UGCA-------CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 35467 | 0.71 | 0.562125 |
Target: 5'- aUCACGGCCGCUGUGGACucUGGGucagacgcuGCCa -3' miRNA: 3'- gAGUGCCGGUGGUGCCUGc-ACCU---------UGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 88149 | 0.72 | 0.464441 |
Target: 5'- gCUCA-GGCCcuguCCAgGGugGUgGGGACCa -3' miRNA: 3'- -GAGUgCCGGu---GGUgCCugCA-CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 34405 | 0.73 | 0.445947 |
Target: 5'- -aCAUGGaCACCACGGgaACGUGaGGGCCc -3' miRNA: 3'- gaGUGCCgGUGGUGCC--UGCAC-CUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 85061 | 0.73 | 0.410234 |
Target: 5'- aCUCugGGCagagcugcucCACaCACGGACGcGGAACa -3' miRNA: 3'- -GAGugCCG----------GUG-GUGCCUGCaCCUUGg -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 60141 | 0.77 | 0.273318 |
Target: 5'- gUCAgGGCUGCCGUGGugGUGGggUCc -3' miRNA: 3'- gAGUgCCGGUGGUGCCugCACCuuGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 31680 | 1.11 | 0.001409 |
Target: 5'- cCUCACGGCCACCACGGACGUGGAACCc -3' miRNA: 3'- -GAGUGCCGGUGGUGCCUGCACCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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