miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28372 3' -64.4 NC_005946.1 + 41964 0.66 0.472575
Target:  5'- cCCCGgguggaCCCGGGGGucccuuGUCGCCcuuuGGCCCUc -3'
miRNA:   3'- -GGGUa-----GGGUCCCUc-----CGGCGG----UCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 23067 0.7 0.266063
Target:  5'- aCCCGgaggaCCCGGaggucccGGAGGuCCGCgAGaCCCCa -3'
miRNA:   3'- -GGGUa----GGGUC-------CCUCC-GGCGgUC-GGGG- -5'
28372 3' -64.4 NC_005946.1 + 20888 0.7 0.272828
Target:  5'- cCUCAgacgCCCuGGaGcAGGCCGCCgcgguGGCCCUg -3'
miRNA:   3'- -GGGUa---GGGuCC-C-UCCGGCGG-----UCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 62368 0.69 0.29859
Target:  5'- uCCCAUCUUGGuGGAagaaGGCCGCguguggcgCAGCCgCCg -3'
miRNA:   3'- -GGGUAGGGUC-CCU----CCGGCG--------GUCGG-GG- -5'
28372 3' -64.4 NC_005946.1 + 69213 0.69 0.305318
Target:  5'- cCCCGUCCUGGaaGGGCaGgUAGCCCCu -3'
miRNA:   3'- -GGGUAGGGUCccUCCGgCgGUCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 83124 0.69 0.312162
Target:  5'- gCCGUCCUgAGGGAGcCCacucCCAGgCCCCa -3'
miRNA:   3'- gGGUAGGG-UCCCUCcGGc---GGUC-GGGG- -5'
28372 3' -64.4 NC_005946.1 + 49252 0.69 0.312162
Target:  5'- aCCUGgagCCCAGgaaggacaGGGGGCUGUCAgaccuGCCCCu -3'
miRNA:   3'- -GGGUa--GGGUC--------CCUCCGGCGGU-----CGGGG- -5'
28372 3' -64.4 NC_005946.1 + 12636 0.68 0.333388
Target:  5'- aCCAUCUgAGGGcagacgaccugaGGGacaGCCuGCCCCa -3'
miRNA:   3'- gGGUAGGgUCCC------------UCCgg-CGGuCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 11093 0.68 0.333388
Target:  5'- gCC-UCUUuuuGGccGCCGCCAGCCCCa -3'
miRNA:   3'- gGGuAGGGuc-CCucCGGCGGUCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 16204 0.7 0.24888
Target:  5'- aCCGUCcgCCAuGGAGGCCGCCgaGGCagCCa -3'
miRNA:   3'- gGGUAG--GGUcCCUCCGGCGG--UCGg-GG- -5'
28372 3' -64.4 NC_005946.1 + 13797 0.7 0.24888
Target:  5'- aCCCAUCUCAGGcugguGAGGCUugagauGUCGGCCUUc -3'
miRNA:   3'- -GGGUAGGGUCC-----CUCCGG------CGGUCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 42375 0.7 0.248304
Target:  5'- uCCCGggaCCAacGGGAcccuuugGGCCGUCGGgCCCCg -3'
miRNA:   3'- -GGGUag-GGU--CCCU-------CCGGCGGUC-GGGG- -5'
28372 3' -64.4 NC_005946.1 + 28663 0.85 0.022157
Target:  5'- aCCAggCCAGGGGGGCCGUCAGCCUg -3'
miRNA:   3'- gGGUagGGUCCCUCCGGCGGUCGGGg -5'
28372 3' -64.4 NC_005946.1 + 34877 0.77 0.088626
Target:  5'- aCCgAUCCCAGGGAcaGGUCccugGCCAGCCUg -3'
miRNA:   3'- -GGgUAGGGUCCCU--CCGG----CGGUCGGGg -5'
28372 3' -64.4 NC_005946.1 + 72827 0.74 0.143122
Target:  5'- uCCCuggagacaCCCAGGGAGGUugUGCUGGCCaCCg -3'
miRNA:   3'- -GGGua------GGGUCCCUCCG--GCGGUCGG-GG- -5'
28372 3' -64.4 NC_005946.1 + 28883 0.72 0.200864
Target:  5'- aCCGUCCCguGGGGAGaGUuugcagaCGuCCAGUCCCg -3'
miRNA:   3'- gGGUAGGG--UCCCUC-CG-------GC-GGUCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 102080 0.72 0.201345
Target:  5'- aCCGUCUCGGGGuccgucAGGCUGggguCCAgGCCCCu -3'
miRNA:   3'- gGGUAGGGUCCC------UCCGGC----GGU-CGGGG- -5'
28372 3' -64.4 NC_005946.1 + 23170 0.72 0.20621
Target:  5'- --uGUCCCAGGGAcccuGGCCGCUccggacGCCUCa -3'
miRNA:   3'- gggUAGGGUCCCU----CCGGCGGu-----CGGGG- -5'
28372 3' -64.4 NC_005946.1 + 82922 0.71 0.216246
Target:  5'- cUCCAggCaCAGGGAGGCCuUCAggGCCCCg -3'
miRNA:   3'- -GGGUagG-GUCCCUCCGGcGGU--CGGGG- -5'
28372 3' -64.4 NC_005946.1 + 56362 0.71 0.237571
Target:  5'- gCCCGUCgUGGuacauGGCCGCCAGCCUg -3'
miRNA:   3'- -GGGUAGgGUCccu--CCGGCGGUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.