Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28372 | 3' | -64.4 | NC_005946.1 | + | 4529 | 0.67 | 0.383724 |
Target: 5'- cCCCAUCaCCcugaguucguugagGGGGAgaaacagguuaaaGGCCGC-GGCCCUc -3' miRNA: 3'- -GGGUAG-GG--------------UCCCU-------------CCGGCGgUCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 7750 | 0.68 | 0.371068 |
Target: 5'- uCCCAUCCUGGGGucGUaaaCGGaCCCCg -3' miRNA: 3'- -GGGUAGGGUCCCucCGgcgGUC-GGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 26418 | 0.68 | 0.363304 |
Target: 5'- cCCUGUCCUcGGGAgccgguuucaGGCUGCUccuGGCCCa -3' miRNA: 3'- -GGGUAGGGuCCCU----------CCGGCGG---UCGGGg -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 9853 | 0.68 | 0.340695 |
Target: 5'- uCCCAcaCCCugggguagugGGGGAGGCUccuCCuGCCCCc -3' miRNA: 3'- -GGGUa-GGG----------UCCCUCCGGc--GGuCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 35731 | 0.68 | 0.333388 |
Target: 5'- gCCCAcuuaucCCCGGGcaugaguuuGAGGCCGaaagagccaCCGGUCCCg -3' miRNA: 3'- -GGGUa-----GGGUCC---------CUCCGGC---------GGUCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 62206 | 0.68 | 0.333388 |
Target: 5'- aCCCucgcgCCCGGGGgaaAGGCCuaCGuCCCCu -3' miRNA: 3'- -GGGua---GGGUCCC---UCCGGcgGUcGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 11093 | 0.68 | 0.333388 |
Target: 5'- gCC-UCUUuuuGGccGCCGCCAGCCCCa -3' miRNA: 3'- gGGuAGGGuc-CCucCGGCGGUCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 12636 | 0.68 | 0.333388 |
Target: 5'- aCCAUCUgAGGGcagacgaccugaGGGacaGCCuGCCCCa -3' miRNA: 3'- gGGUAGGgUCCC------------UCCgg-CGGuCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 49252 | 0.69 | 0.312162 |
Target: 5'- aCCUGgagCCCAGgaaggacaGGGGGCUGUCAgaccuGCCCCu -3' miRNA: 3'- -GGGUa--GGGUC--------CCUCCGGCGGU-----CGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 83124 | 0.69 | 0.312162 |
Target: 5'- gCCGUCCUgAGGGAGcCCacucCCAGgCCCCa -3' miRNA: 3'- gGGUAGGG-UCCCUCcGGc---GGUC-GGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 69213 | 0.69 | 0.305318 |
Target: 5'- cCCCGUCCUGGaaGGGCaGgUAGCCCCu -3' miRNA: 3'- -GGGUAGGGUCccUCCGgCgGUCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 62368 | 0.69 | 0.29859 |
Target: 5'- uCCCAUCUUGGuGGAagaaGGCCGCguguggcgCAGCCgCCg -3' miRNA: 3'- -GGGUAGGGUC-CCU----CCGGCG--------GUCGG-GG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 20888 | 0.7 | 0.272828 |
Target: 5'- cCUCAgacgCCCuGGaGcAGGCCGCCgcgguGGCCCUg -3' miRNA: 3'- -GGGUa---GGGuCC-C-UCCGGCGG-----UCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 23067 | 0.7 | 0.266063 |
Target: 5'- aCCCGgaggaCCCGGaggucccGGAGGuCCGCgAGaCCCCa -3' miRNA: 3'- -GGGUa----GGGUC-------CCUCC-GGCGgUC-GGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 16204 | 0.7 | 0.24888 |
Target: 5'- aCCGUCcgCCAuGGAGGCCGCCgaGGCagCCa -3' miRNA: 3'- gGGUAG--GGUcCCUCCGGCGG--UCGg-GG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 13797 | 0.7 | 0.24888 |
Target: 5'- aCCCAUCUCAGGcugguGAGGCUugagauGUCGGCCUUc -3' miRNA: 3'- -GGGUAGGGUCC-----CUCCGG------CGGUCGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 42375 | 0.7 | 0.248304 |
Target: 5'- uCCCGggaCCAacGGGAcccuuugGGCCGUCGGgCCCCg -3' miRNA: 3'- -GGGUag-GGU--CCCU-------CCGGCGGUC-GGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 56362 | 0.71 | 0.237571 |
Target: 5'- gCCCGUCgUGGuacauGGCCGCCAGCCUg -3' miRNA: 3'- -GGGUAGgGUCccu--CCGGCGGUCGGGg -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 82922 | 0.71 | 0.216246 |
Target: 5'- cUCCAggCaCAGGGAGGCCuUCAggGCCCCg -3' miRNA: 3'- -GGGUagG-GUCCCUCCGGcGGU--CGGGG- -5' |
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28372 | 3' | -64.4 | NC_005946.1 | + | 23170 | 0.72 | 0.20621 |
Target: 5'- --uGUCCCAGGGAcccuGGCCGCUccggacGCCUCa -3' miRNA: 3'- gggUAGGGUCCCU----CCGGCGGu-----CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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