miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28373 5' -54.7 NC_005946.1 + 14639 0.66 0.903003
Target:  5'- -gGGGAGGCC-GACAagGGCACccugcuGGACGc -3'
miRNA:   3'- gaCUCUCUGGaCUGUg-UCGUG------CCUGC- -5'
28373 5' -54.7 NC_005946.1 + 88355 0.66 0.889535
Target:  5'- -aGAGAGACagggcaaagGAgGCGGC-CGGGCa -3'
miRNA:   3'- gaCUCUCUGga-------CUgUGUCGuGCCUGc -5'
28373 5' -54.7 NC_005946.1 + 45890 0.66 0.875107
Target:  5'- -cGAGAGACa-GGUACAGCGC-GACGg -3'
miRNA:   3'- gaCUCUCUGgaCUGUGUCGUGcCUGC- -5'
28373 5' -54.7 NC_005946.1 + 3535 0.67 0.867543
Target:  5'- -aGAGGGGCCUGGC----CAUGGACa -3'
miRNA:   3'- gaCUCUCUGGACUGugucGUGCCUGc -5'
28373 5' -54.7 NC_005946.1 + 10286 0.67 0.843532
Target:  5'- -cGGGAGcGCCggGGCAUAGUccgACGGGCa -3'
miRNA:   3'- gaCUCUC-UGGa-CUGUGUCG---UGCCUGc -5'
28373 5' -54.7 NC_005946.1 + 3075 0.68 0.826493
Target:  5'- -aGGGGGGCCUGugGCuGGagaGgGGACGc -3'
miRNA:   3'- gaCUCUCUGGACugUG-UCg--UgCCUGC- -5'
28373 5' -54.7 NC_005946.1 + 16194 0.69 0.75156
Target:  5'- aUG-GAGGCCgccGAgGCAGCcAUGGACGc -3'
miRNA:   3'- gACuCUCUGGa--CUgUGUCG-UGCCUGC- -5'
28373 5' -54.7 NC_005946.1 + 12065 0.69 0.741587
Target:  5'- aUGAGGGAgCUGGCGgAGCA-GGAUc -3'
miRNA:   3'- gACUCUCUgGACUGUgUCGUgCCUGc -5'
28373 5' -54.7 NC_005946.1 + 61638 0.7 0.710072
Target:  5'- aCUG-GGGGCCUuuuucGGCagggaggACAGCACGGugGa -3'
miRNA:   3'- -GACuCUCUGGA-----CUG-------UGUCGUGCCugC- -5'
28373 5' -54.7 NC_005946.1 + 94145 0.7 0.690403
Target:  5'- -cGGGAGACCUGAC-CGcCAagaGGACGc -3'
miRNA:   3'- gaCUCUCUGGACUGuGUcGUg--CCUGC- -5'
28373 5' -54.7 NC_005946.1 + 21063 0.73 0.533586
Target:  5'- aUGAGGGACCUGGucaaGCAGUGCGaGCGu -3'
miRNA:   3'- gACUCUCUGGACUg---UGUCGUGCcUGC- -5'
28373 5' -54.7 NC_005946.1 + 73284 0.73 0.513336
Target:  5'- --uAGGGACCUG-CACAGaCAgGGACGa -3'
miRNA:   3'- gacUCUCUGGACuGUGUC-GUgCCUGC- -5'
28373 5' -54.7 NC_005946.1 + 35577 1.08 0.002926
Target:  5'- cCUGAGAGACCUGACACAGCACGGACGc -3'
miRNA:   3'- -GACUCUCUGGACUGUGUCGUGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.