miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28375 3' -56 NC_005946.1 + 12765 0.66 0.843532
Target:  5'- gGGaCGGCgCUgugcucAGGGCGGAgGGAGGCAg -3'
miRNA:   3'- -UC-GCCG-GAac----UCCUGCCU-UCUCUGUg -5'
28375 3' -56 NC_005946.1 + 67518 0.66 0.843532
Target:  5'- aAGcCGGCCUUGAccaGGACGucuGAGGCc- -3'
miRNA:   3'- -UC-GCCGGAACU---CCUGCcuuCUCUGug -5'
28375 3' -56 NC_005946.1 + 27867 0.66 0.826493
Target:  5'- -cUGGCCUUGGGGAUGGGAccaaACAUu -3'
miRNA:   3'- ucGCCGGAACUCCUGCCUUcuc-UGUG- -5'
28375 3' -56 NC_005946.1 + 79003 0.66 0.823871
Target:  5'- cGGCGGCCacgGAGG-CGGcguacgccagggccGGGGGcCACa -3'
miRNA:   3'- -UCGCCGGaa-CUCCuGCC--------------UUCUCuGUG- -5'
28375 3' -56 NC_005946.1 + 56056 0.66 0.817688
Target:  5'- gGGUGGCCcUGucuacguucAGGAgGGAAGAGGgGu -3'
miRNA:   3'- -UCGCCGGaAC---------UCCUgCCUUCUCUgUg -5'
28375 3' -56 NC_005946.1 + 3074 0.67 0.790234
Target:  5'- gGGgGGCC-UGuGGcUGGAgaGGGGACGCu -3'
miRNA:   3'- -UCgCCGGaACuCCuGCCU--UCUCUGUG- -5'
28375 3' -56 NC_005946.1 + 95363 0.67 0.780768
Target:  5'- --aGGCCcaGGGGcuuCGGggGAGGCAg -3'
miRNA:   3'- ucgCCGGaaCUCCu--GCCuuCUCUGUg -5'
28375 3' -56 NC_005946.1 + 88337 0.67 0.7779
Target:  5'- aGGCGGCCggGcAGGcACuGGAccuccucaggcgcgAGGGGCACu -3'
miRNA:   3'- -UCGCCGGaaC-UCC-UG-CCU--------------UCUCUGUG- -5'
28375 3' -56 NC_005946.1 + 79293 0.67 0.771161
Target:  5'- cGGCGGCa--GAGaauGCGGGAGGGuCGCg -3'
miRNA:   3'- -UCGCCGgaaCUCc--UGCCUUCUCuGUG- -5'
28375 3' -56 NC_005946.1 + 72402 0.67 0.771161
Target:  5'- uGUGuGCucuCUUGGGGACGGA-GAGuACGCc -3'
miRNA:   3'- uCGC-CG---GAACUCCUGCCUuCUC-UGUG- -5'
28375 3' -56 NC_005946.1 + 83734 0.67 0.761421
Target:  5'- cGUGGCCgUGGGcGCGGGugGGGGGCGa -3'
miRNA:   3'- uCGCCGGaACUCcUGCCU--UCUCUGUg -5'
28375 3' -56 NC_005946.1 + 20861 0.67 0.761421
Target:  5'- cGGUGGCCcUGAGGGCaaaGGcugcGGcAGACGCc -3'
miRNA:   3'- -UCGCCGGaACUCCUG---CCu---UC-UCUGUG- -5'
28375 3' -56 NC_005946.1 + 13313 0.68 0.731513
Target:  5'- uGGUGGCC--GAGGGCcugacguuuaaGGAGguGAGGCACa -3'
miRNA:   3'- -UCGCCGGaaCUCCUG-----------CCUU--CUCUGUG- -5'
28375 3' -56 NC_005946.1 + 63977 0.68 0.710072
Target:  5'- cGCGGCCUucaUGAGGgacGCGGggGGuaucucuGACcCg -3'
miRNA:   3'- uCGCCGGA---ACUCC---UGCCuuCU-------CUGuG- -5'
28375 3' -56 NC_005946.1 + 95532 0.68 0.700782
Target:  5'- cGCGuuaGCCaaggUGAGGAgaGGAGGAGGCGg -3'
miRNA:   3'- uCGC---CGGa---ACUCCUg-CCUUCUCUGUg -5'
28375 3' -56 NC_005946.1 + 71852 0.69 0.648466
Target:  5'- aGGCGGCCaaGAGGcccGCGGGccAGAGgACGg -3'
miRNA:   3'- -UCGCCGGaaCUCC---UGCCU--UCUC-UGUg -5'
28375 3' -56 NC_005946.1 + 98621 0.69 0.637925
Target:  5'- cGGCGGCCgugGuGGccucaGCGGAcAGGGugACg -3'
miRNA:   3'- -UCGCCGGaa-CuCC-----UGCCU-UCUCugUG- -5'
28375 3' -56 NC_005946.1 + 61402 0.7 0.585314
Target:  5'- gGGUGGaCCacgucaaGAGGAUGGccGAGACACu -3'
miRNA:   3'- -UCGCC-GGaa-----CUCCUGCCuuCUCUGUG- -5'
28375 3' -56 NC_005946.1 + 82441 0.72 0.483577
Target:  5'- -uCGGCCgaGAGGAUGGAcgugucagcgGGAGGCAg -3'
miRNA:   3'- ucGCCGGaaCUCCUGCCU----------UCUCUGUg -5'
28375 3' -56 NC_005946.1 + 72848 0.75 0.357482
Target:  5'- -aUGGCCgaGGGGGCGGGguucucccuGGAGACACc -3'
miRNA:   3'- ucGCCGGaaCUCCUGCCU---------UCUCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.