Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28375 | 5' | -57.5 | NC_005946.1 | + | 56281 | 0.66 | 0.786696 |
Target: 5'- cGGCCUCUgccgCCggGUCCa-UGGCAaGCa -3' miRNA: 3'- aCCGGAGAaa--GGa-CAGGggGCUGU-CG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 102605 | 0.66 | 0.786696 |
Target: 5'- aUGGCCucguagUCUUUCCuccuggacuccaUGUCCCCgccaGAgAGUa -3' miRNA: 3'- -ACCGG------AGAAAGG------------ACAGGGGg---CUgUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 8056 | 0.66 | 0.785764 |
Target: 5'- gGGCUcaccgUCUUUUCUccugacaGUCaCCCUGAUGGCg -3' miRNA: 3'- aCCGG-----AGAAAGGA-------CAG-GGGGCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 48618 | 0.66 | 0.767804 |
Target: 5'- aUGGCCgcccUCUccucggCCUGcUCCUCGGCAGUc -3' miRNA: 3'- -ACCGG----AGAaa----GGACaGGGGGCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 22161 | 0.66 | 0.767804 |
Target: 5'- cGGCCgCUccCCUGaCCgCCG-CAGCg -3' miRNA: 3'- aCCGGaGAaaGGACaGGgGGCuGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 45230 | 0.66 | 0.748415 |
Target: 5'- uUGGCCUCaaagaucuugUgaCCgGUCCuCCCGGC-GCa -3' miRNA: 3'- -ACCGGAG----------AaaGGaCAGG-GGGCUGuCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 31025 | 0.66 | 0.738557 |
Target: 5'- aGGCCUCaaagacUCUugagaguuUGUCCCCCGugAu- -3' miRNA: 3'- aCCGGAGaa----AGG--------ACAGGGGGCugUcg -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 73522 | 0.67 | 0.728604 |
Target: 5'- gUGGCggaUCUggCCaagcacgUCCCCGACGGCa -3' miRNA: 3'- -ACCGg--AGAaaGGaca----GGGGGCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 70151 | 0.67 | 0.728604 |
Target: 5'- aGGCCUUaaacucgUCCUcugGUCUCCCaGCGGUg -3' miRNA: 3'- aCCGGAGaa-----AGGA---CAGGGGGcUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 28520 | 0.67 | 0.718565 |
Target: 5'- gUGGCCuggUCggcgUCCuUGaUgCCCGGCAGCg -3' miRNA: 3'- -ACCGG---AGaa--AGG-ACaGgGGGCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 57042 | 0.67 | 0.718565 |
Target: 5'- cGGCCUgCUc-CCUGUCUgUCGGCuGCc -3' miRNA: 3'- aCCGGA-GAaaGGACAGGgGGCUGuCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 49097 | 0.67 | 0.708449 |
Target: 5'- cUGGCCUUccccgcCCUGUCCaccaCCUGACccgAGCa -3' miRNA: 3'- -ACCGGAGaaa---GGACAGG----GGGCUG---UCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 89860 | 0.68 | 0.674647 |
Target: 5'- gUGGCCUCg--CCggggacgaugaccgUG-CCCCCGuCAGUc -3' miRNA: 3'- -ACCGGAGaaaGG--------------ACaGGGGGCuGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 86435 | 0.68 | 0.667416 |
Target: 5'- aGGCCUCUg---UGUCUUCagaaGACAGCu -3' miRNA: 3'- aCCGGAGAaaggACAGGGGg---CUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 98142 | 0.68 | 0.667416 |
Target: 5'- aUGGCCUgUcUCUcGUCCCCggugaugagggCGACGGUc -3' miRNA: 3'- -ACCGGAgAaAGGaCAGGGG-----------GCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 437 | 0.68 | 0.657061 |
Target: 5'- gGGCCUCcaUCCUccGUCUCCUGucguacuccuuCAGCa -3' miRNA: 3'- aCCGGAGaaAGGA--CAGGGGGCu----------GUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 96941 | 0.68 | 0.646685 |
Target: 5'- -cGUCUCUgccaCUGUCCUCUGACuGCu -3' miRNA: 3'- acCGGAGAaag-GACAGGGGGCUGuCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 68828 | 0.68 | 0.636298 |
Target: 5'- cUGGCCUCagagUCCagGUCCCacagcuCCGAgcuCAGCc -3' miRNA: 3'- -ACCGGAGaa--AGGa-CAGGG------GGCU---GUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 86148 | 0.69 | 0.615521 |
Target: 5'- uUGGUCUCUUcagcggUCCucaUGUCCCUguCGAgGGCu -3' miRNA: 3'- -ACCGGAGAA------AGG---ACAGGGG--GCUgUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 65105 | 0.7 | 0.543598 |
Target: 5'- gGGCCUCUaUCaggagaaUGUCCgCaGACAGCc -3' miRNA: 3'- aCCGGAGAaAGg------ACAGGgGgCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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