Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28375 | 5' | -57.5 | NC_005946.1 | + | 33259 | 0.7 | 0.533518 |
Target: 5'- gGGCacag-UCC--UCCCCCGGCAGCc -3' miRNA: 3'- aCCGgagaaAGGacAGGGGGCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 14854 | 0.7 | 0.503704 |
Target: 5'- --uUCUCggUCCUGUCCCUguacauugCGACGGCg -3' miRNA: 3'- accGGAGaaAGGACAGGGG--------GCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 19779 | 0.73 | 0.367844 |
Target: 5'- aGGCCguccUCCUGUCCCUggugaucaUGGCAGCc -3' miRNA: 3'- aCCGGagaaAGGACAGGGG--------GCUGUCG- -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 34558 | 0.74 | 0.336099 |
Target: 5'- gGGCCU---UCCUGUCCCuccaggCCGGCAGg -3' miRNA: 3'- aCCGGAgaaAGGACAGGG------GGCUGUCg -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 36528 | 0.76 | 0.253128 |
Target: 5'- aUGGCCUCUgUCCaGUCCCCgaGACAa- -3' miRNA: 3'- -ACCGGAGAaAGGaCAGGGGg-CUGUcg -5' |
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28375 | 5' | -57.5 | NC_005946.1 | + | 36204 | 1.11 | 0.001027 |
Target: 5'- aUGGCCUCUUUCCUGUCCCCCGACAGCc -3' miRNA: 3'- -ACCGGAGAAAGGACAGGGGGCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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