Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 56084 | 0.66 | 0.937916 |
Target: 5'- aCCAUggcccUCA-GGCUCuCCAGgGUGAGg -3' miRNA: 3'- -GGUGau---AGUgCCGAG-GGUCgUACUCg -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 8100 | 0.66 | 0.932798 |
Target: 5'- cCC-CUGUcCAgGGUggCCAGgAUGAGCu -3' miRNA: 3'- -GGuGAUA-GUgCCGagGGUCgUACUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 69224 | 0.66 | 0.932798 |
Target: 5'- -gACUGUCAUGGCcccgUCCUGGaa-GGGCa -3' miRNA: 3'- ggUGAUAGUGCCG----AGGGUCguaCUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 27039 | 0.66 | 0.932272 |
Target: 5'- gCCAagucugcCUGUCGuCGGCgaggUCCGcCGUGAGCa -3' miRNA: 3'- -GGU-------GAUAGU-GCCGa---GGGUcGUACUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 100684 | 0.67 | 0.903342 |
Target: 5'- aCAUUGUCgcgcaguccacACGGCUCgCAGUAUGcGUc -3' miRNA: 3'- gGUGAUAG-----------UGCCGAGgGUCGUACuCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 27486 | 0.67 | 0.896686 |
Target: 5'- gCCGCaGUCACGGCgUCCaacuGCcucAUGAGg -3' miRNA: 3'- -GGUGaUAGUGCCG-AGGgu--CG---UACUCg -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 35276 | 0.67 | 0.896686 |
Target: 5'- cCCGCUGcacCugGGUaggaCgGGCAUGGGCg -3' miRNA: 3'- -GGUGAUa--GugCCGag--GgUCGUACUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 99620 | 0.67 | 0.896006 |
Target: 5'- -aGCaGUCugGGCUgcucuccCCUGGCGUcGAGCa -3' miRNA: 3'- ggUGaUAGugCCGA-------GGGUCGUA-CUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 21749 | 0.67 | 0.88263 |
Target: 5'- cCCugUuuGUCAUGGCcCUgAGCGcGAGCc -3' miRNA: 3'- -GGugA--UAGUGCCGaGGgUCGUaCUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 61343 | 0.67 | 0.88263 |
Target: 5'- -gACguguugCACGGCUCCaAGgAUGAGUg -3' miRNA: 3'- ggUGaua---GUGCCGAGGgUCgUACUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 35602 | 0.79 | 0.300007 |
Target: 5'- gCCGCggcCugGGCUUCCAGCA-GAGCc -3' miRNA: 3'- -GGUGauaGugCCGAGGGUCGUaCUCG- -5' |
|||||||
28378 | 3' | -53.6 | NC_005946.1 | + | 41137 | 1.14 | 0.001598 |
Target: 5'- gCCACUAUCACGGCUCCCAGCAUGAGCu -3' miRNA: 3'- -GGUGAUAGUGCCGAGGGUCGUACUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home