Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28379 | 3' | -53.5 | NC_005946.1 | + | 60146 | 0.66 | 0.926069 |
|
Target: 5'- aGCCGGUCaGGGCuGCcGUGGUg--GUGGg -3' miRNA: 3'- -CGGUCAG-CCUG-UGuCACCAggaUACC- -5' |
|||||||
| 28379 | 3' | -53.5 | NC_005946.1 | + | 70126 | 0.68 | 0.888389 |
|
Target: 5'- cCCAG-CGGugGuCAGgagcUGGUCCaGUGGa -3' miRNA: 3'- cGGUCaGCCugU-GUC----ACCAGGaUACC- -5' |
|||||||
| 28379 | 3' | -53.5 | NC_005946.1 | + | 71782 | 0.68 | 0.866266 |
|
Target: 5'- aCCGG-CGGGCAC---GGUCCUgGUGGg -3' miRNA: 3'- cGGUCaGCCUGUGucaCCAGGA-UACC- -5' |
|||||||
| 28379 | 3' | -53.5 | NC_005946.1 | + | 82890 | 0.69 | 0.833668 |
|
Target: 5'- aGCCAGUCgccacgGGACACucgcuGUccagGGUCCccGUGGg -3' miRNA: 3'- -CGGUCAG------CCUGUGu----CA----CCAGGa-UACC- -5' |
|||||||
| 28379 | 3' | -53.5 | NC_005946.1 | + | 44878 | 0.71 | 0.69893 |
|
Target: 5'- gGCCuGGUgGGAaccCACccUGGUCCUGUGGa -3' miRNA: 3'- -CGG-UCAgCCU---GUGucACCAGGAUACC- -5' |
|||||||
| 28379 | 3' | -53.5 | NC_005946.1 | + | 41663 | 1.14 | 0.001886 |
|
Target: 5'- gGCCAGUCGGACACAGUGGUCCUAUGGg -3' miRNA: 3'- -CGGUCAGCCUGUGUCACCAGGAUACC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home