miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28379 5' -59.8 NC_005946.1 + 64692 0.66 0.701595
Target:  5'- uCCCACCaGUCCagcCCUGcCCGuCGGg -3'
miRNA:   3'- uGGGUGGaCAGGggaGGAU-GGCuGCC- -5'
28379 5' -59.8 NC_005946.1 + 28905 0.66 0.671655
Target:  5'- gACCUGCCcuuucgGUCUCCUCaccgucCCGugGGg -3'
miRNA:   3'- -UGGGUGGa-----CAGGGGAGgau---GGCugCC- -5'
28379 5' -59.8 NC_005946.1 + 89339 0.66 0.661601
Target:  5'- uUCUACCUgGUCCaCCUCUUGCCG-Ca- -3'
miRNA:   3'- uGGGUGGA-CAGG-GGAGGAUGGCuGcc -5'
28379 5' -59.8 NC_005946.1 + 46182 0.67 0.631333
Target:  5'- cCCUugCaUGUCCCC-CCUgacguugugacACaCGACGGg -3'
miRNA:   3'- uGGGugG-ACAGGGGaGGA-----------UG-GCUGCC- -5'
28379 5' -59.8 NC_005946.1 + 41558 0.67 0.621234
Target:  5'- cCCCGCCUc-UCCCUCCUcACCcAUGGg -3'
miRNA:   3'- uGGGUGGAcaGGGGAGGA-UGGcUGCC- -5'
28379 5' -59.8 NC_005946.1 + 9452 0.67 0.621234
Target:  5'- cCCCGCCgcGUCCCCUCCauucUCGA-GGc -3'
miRNA:   3'- uGGGUGGa-CAGGGGAGGau--GGCUgCC- -5'
28379 5' -59.8 NC_005946.1 + 2887 0.67 0.601069
Target:  5'- cGCCgACCUGUCCUCgcaggacGCCGGCuGGg -3'
miRNA:   3'- -UGGgUGGACAGGGGagga---UGGCUG-CC- -5'
28379 5' -59.8 NC_005946.1 + 35105 0.67 0.600062
Target:  5'- cAUCCACCUGUCuagcuguCCCUCCcACCccaGGa -3'
miRNA:   3'- -UGGGUGGACAG-------GGGAGGaUGGcugCC- -5'
28379 5' -59.8 NC_005946.1 + 59607 0.68 0.59202
Target:  5'- gACCCACagaggccaagagggGUCcuauggCCCUCCUGCCGGCc- -3'
miRNA:   3'- -UGGGUGga------------CAG------GGGAGGAUGGCUGcc -5'
28379 5' -59.8 NC_005946.1 + 73934 0.68 0.591016
Target:  5'- -gUCACCUcuuccgggagaGUgCCCCUCCgaccCCGGCGGa -3'
miRNA:   3'- ugGGUGGA-----------CA-GGGGAGGau--GGCUGCC- -5'
28379 5' -59.8 NC_005946.1 + 49293 0.68 0.590012
Target:  5'- uGCCC-CC-GUCUccaccgaCCUCCUGuagcCCGACGGg -3'
miRNA:   3'- -UGGGuGGaCAGG-------GGAGGAU----GGCUGCC- -5'
28379 5' -59.8 NC_005946.1 + 80376 0.68 0.580992
Target:  5'- gACCaGCCUGUCCCUgCCUuCgGACaGGg -3'
miRNA:   3'- -UGGgUGGACAGGGGaGGAuGgCUG-CC- -5'
28379 5' -59.8 NC_005946.1 + 82969 0.68 0.571004
Target:  5'- aGCCCAUaaGgaucCCCCUCagccCCGGCGGg -3'
miRNA:   3'- -UGGGUGgaCa---GGGGAGgau-GGCUGCC- -5'
28379 5' -59.8 NC_005946.1 + 42309 0.68 0.558084
Target:  5'- gGCCUACCUGaCCCCUggggcccuuuggacCCUcaggACCcGCGGg -3'
miRNA:   3'- -UGGGUGGACaGGGGA--------------GGA----UGGcUGCC- -5'
28379 5' -59.8 NC_005946.1 + 28332 0.69 0.531532
Target:  5'- gGCCCACCUcaCUCCUCCUcccagccugGCCaucucgggguuGGCGGa -3'
miRNA:   3'- -UGGGUGGAcaGGGGAGGA---------UGG-----------CUGCC- -5'
28379 5' -59.8 NC_005946.1 + 9667 0.71 0.394875
Target:  5'- -aCCGCCUGUCCCCUgucCCUGgccCCGcACaGGg -3'
miRNA:   3'- ugGGUGGACAGGGGA---GGAU---GGC-UG-CC- -5'
28379 5' -59.8 NC_005946.1 + 8553 0.72 0.354602
Target:  5'- cCCCACCUcGUCCaCCUCCagggUGCCGucUGGa -3'
miRNA:   3'- uGGGUGGA-CAGG-GGAGG----AUGGCu-GCC- -5'
28379 5' -59.8 NC_005946.1 + 34557 0.72 0.339324
Target:  5'- gGCCUuCCUGU-CCCUCCagGCCGGCaGGg -3'
miRNA:   3'- -UGGGuGGACAgGGGAGGa-UGGCUG-CC- -5'
28379 5' -59.8 NC_005946.1 + 19603 0.73 0.315173
Target:  5'- uGCCCcgACCUGUCUgccgcagcgucuguCCUugccUCUGCCGACGGg -3'
miRNA:   3'- -UGGG--UGGACAGG--------------GGA----GGAUGGCUGCC- -5'
28379 5' -59.8 NC_005946.1 + 41628 1.1 0.000837
Target:  5'- cACCCACCUGUCCCCUCCUACCGACGGg -3'
miRNA:   3'- -UGGGUGGACAGGGGAGGAUGGCUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.