miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28380 3' -54.4 NC_005946.1 + 74131 0.66 0.910563
Target:  5'- cCCGUGccCAGACGGCaaacCCUGggagaAGCUCa -3'
miRNA:   3'- -GGUACu-GUCUGUCGgu--GGAC-----UCGAGc -5'
28380 3' -54.4 NC_005946.1 + 15786 0.66 0.904225
Target:  5'- gCC-UGACu-GCGGCCuCC-GAGCUCGa -3'
miRNA:   3'- -GGuACUGucUGUCGGuGGaCUCGAGC- -5'
28380 3' -54.4 NC_005946.1 + 66413 0.66 0.897636
Target:  5'- gCAUGAUggacaAGACAGCCGugccucaaucUCUGAGCg-- -3'
miRNA:   3'- gGUACUG-----UCUGUCGGU----------GGACUCGagc -5'
28380 3' -54.4 NC_005946.1 + 9005 0.66 0.890103
Target:  5'- cUCGUGACAGACAGgUucaGCCUGAuugucuuGC-CGg -3'
miRNA:   3'- -GGUACUGUCUGUCgG---UGGACU-------CGaGC- -5'
28380 3' -54.4 NC_005946.1 + 42948 0.67 0.875659
Target:  5'- aUCAUGACAGACAgggguguGCCGgcguCCUGgaccguaaacGGCUUGa -3'
miRNA:   3'- -GGUACUGUCUGU-------CGGU----GGAC----------UCGAGC- -5'
28380 3' -54.4 NC_005946.1 + 25444 0.67 0.853077
Target:  5'- -gAUGGCAGACaaguacuacgaGGCCacACCUcaGAGCUCu -3'
miRNA:   3'- ggUACUGUCUG-----------UCGG--UGGA--CUCGAGc -5'
28380 3' -54.4 NC_005946.1 + 12618 0.68 0.795287
Target:  5'- aCC-UGAgGGACAGCCugCcccaggagguggagGAGCUCc -3'
miRNA:   3'- -GGuACUgUCUGUCGGugGa-------------CUCGAGc -5'
28380 3' -54.4 NC_005946.1 + 2236 0.68 0.791537
Target:  5'- gCCccGACcaGGAC-GCCGcCCUGGGCUCc -3'
miRNA:   3'- -GGuaCUG--UCUGuCGGU-GGACUCGAGc -5'
28380 3' -54.4 NC_005946.1 + 103661 0.7 0.722509
Target:  5'- ---aGAgAGAuCAGCCACCuUGAGCUUc -3'
miRNA:   3'- gguaCUgUCU-GUCGGUGG-ACUCGAGc -5'
28380 3' -54.4 NC_005946.1 + 36693 0.73 0.533066
Target:  5'- gCCcUGAC-GugAGCCucucuccugacggGCCUGGGCUCGg -3'
miRNA:   3'- -GGuACUGuCugUCGG-------------UGGACUCGAGC- -5'
28380 3' -54.4 NC_005946.1 + 38708 0.78 0.296172
Target:  5'- uCCGUGAucuCGGAUGGCCuCCUcGAGCUCGg -3'
miRNA:   3'- -GGUACU---GUCUGUCGGuGGA-CUCGAGC- -5'
28380 3' -54.4 NC_005946.1 + 43882 1.12 0.001762
Target:  5'- cCCAUGACAGACAGCCACCUGAGCUCGg -3'
miRNA:   3'- -GGUACUGUCUGUCGGUGGACUCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.