miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28384 5' -51.9 NC_005946.1 + 40107 0.66 0.969745
Target:  5'- gGGCcUGACggGGACC-CuGCCguacUCUUUGGg -3'
miRNA:   3'- -CCGaACUG--CCUGGaGuCGG----AGAAAUC- -5'
28384 5' -51.9 NC_005946.1 + 67889 0.66 0.969745
Target:  5'- cGGCca---GGACCUCcGCCUCggggUAGu -3'
miRNA:   3'- -CCGaacugCCUGGAGuCGGAGaa--AUC- -5'
28384 5' -51.9 NC_005946.1 + 35997 0.66 0.969433
Target:  5'- uGGCcuccaGGGCCUCggcguccaugucaGGCCUCUUUAc -3'
miRNA:   3'- -CCGaacugCCUGGAG-------------UCGGAGAAAUc -5'
28384 5' -51.9 NC_005946.1 + 42907 0.66 0.966525
Target:  5'- cGGCUUGAcCGGAUa-CGGCUuacUCUUUGu -3'
miRNA:   3'- -CCGAACU-GCCUGgaGUCGG---AGAAAUc -5'
28384 5' -51.9 NC_005946.1 + 36236 0.66 0.955432
Target:  5'- cGGCcuugagGACGGAagagacacaagcCCUCAugGCCUCUUUc- -3'
miRNA:   3'- -CCGaa----CUGCCU------------GGAGU--CGGAGAAAuc -5'
28384 5' -51.9 NC_005946.1 + 34650 0.67 0.946328
Target:  5'- gGGCcugGACauggauaucuggaGGGcCCUCAGCCUCUg--- -3'
miRNA:   3'- -CCGaa-CUG-------------CCU-GGAGUCGGAGAaauc -5'
28384 5' -51.9 NC_005946.1 + 20953 0.67 0.942077
Target:  5'- cGUggUGGCGGACCU-GGCCUCc---- -3'
miRNA:   3'- cCGa-ACUGCCUGGAgUCGGAGaaauc -5'
28384 5' -51.9 NC_005946.1 + 35128 0.67 0.937105
Target:  5'- aGCcUGACGGACCUCAGgacguccauccaCCUgUcUAGc -3'
miRNA:   3'- cCGaACUGCCUGGAGUC------------GGAgAaAUC- -5'
28384 5' -51.9 NC_005946.1 + 74510 0.68 0.926365
Target:  5'- cGGC--GGCGGccuccuCCUCGGCCUCg---- -3'
miRNA:   3'- -CCGaaCUGCCu-----GGAGUCGGAGaaauc -5'
28384 5' -51.9 NC_005946.1 + 24692 0.68 0.914562
Target:  5'- gGGCccggGugGGGCCUCcuCCUCUa--- -3'
miRNA:   3'- -CCGaa--CugCCUGGAGucGGAGAaauc -5'
28384 5' -51.9 NC_005946.1 + 63933 0.7 0.81361
Target:  5'- ----cGAUGGcCCUCAGCCUCUg--- -3'
miRNA:   3'- ccgaaCUGCCuGGAGUCGGAGAaauc -5'
28384 5' -51.9 NC_005946.1 + 27641 0.71 0.794884
Target:  5'- -cCUUGA-GGuuguuCCUCAGCCUCUUUAc -3'
miRNA:   3'- ccGAACUgCCu----GGAGUCGGAGAAAUc -5'
28384 5' -51.9 NC_005946.1 + 40284 0.71 0.78527
Target:  5'- gGGCUcgGACGG-CCUgaCGGCCUCUc--- -3'
miRNA:   3'- -CCGAa-CUGCCuGGA--GUCGGAGAaauc -5'
28384 5' -51.9 NC_005946.1 + 89286 0.73 0.671772
Target:  5'- gGGCUcgucGGCGGACCUaguuuGCCUCUgcAGg -3'
miRNA:   3'- -CCGAa---CUGCCUGGAgu---CGGAGAaaUC- -5'
28384 5' -51.9 NC_005946.1 + 47222 1.1 0.003751
Target:  5'- gGGCUUGACGGACCUCAGCCUCUUUAGc -3'
miRNA:   3'- -CCGAACUGCCUGGAGUCGGAGAAAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.