miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28385 3' -53.9 NC_005946.1 + 56154 0.66 0.911347
Target:  5'- uGUCAcuGGGGCCUCggGGAugGCGaCUGCg -3'
miRNA:   3'- -CAGU--CCCUGGAGa-CUUugUGUcGGUG- -5'
28385 3' -53.9 NC_005946.1 + 83073 0.66 0.904928
Target:  5'- uUCAGGGACCaguUCUcuAGgGCAGUCAg -3'
miRNA:   3'- cAGUCCCUGG---AGAcuUUgUGUCGGUg -5'
28385 3' -53.9 NC_005946.1 + 55822 0.66 0.898249
Target:  5'- gGUCAGGGcCUUCUuuGACGCcuCCGCc -3'
miRNA:   3'- -CAGUCCCuGGAGAcuUUGUGucGGUG- -5'
28385 3' -53.9 NC_005946.1 + 12150 0.67 0.852968
Target:  5'- aUCAGaGGACC-CUGguGCACaucguGGCCAg -3'
miRNA:   3'- cAGUC-CCUGGaGACuuUGUG-----UCGGUg -5'
28385 3' -53.9 NC_005946.1 + 41472 0.67 0.852968
Target:  5'- cGUCAcccuuGGGACC-CUGGAGCGCAaucagguuacCCACg -3'
miRNA:   3'- -CAGU-----CCCUGGaGACUUUGUGUc---------GGUG- -5'
28385 3' -53.9 NC_005946.1 + 47620 0.67 0.844607
Target:  5'- cUCAGGGA-CUCUGc--CACccuGGCCGCa -3'
miRNA:   3'- cAGUCCCUgGAGACuuuGUG---UCGGUG- -5'
28385 3' -53.9 NC_005946.1 + 49660 0.67 0.836032
Target:  5'- cGUCGGGGACCUUg-----ACAGCC-Ca -3'
miRNA:   3'- -CAGUCCCUGGAGacuuugUGUCGGuG- -5'
28385 3' -53.9 NC_005946.1 + 67935 0.68 0.827252
Target:  5'- aUgAGGGACCUCucguUGGggUACuGCUGCa -3'
miRNA:   3'- cAgUCCCUGGAG----ACUuuGUGuCGGUG- -5'
28385 3' -53.9 NC_005946.1 + 85237 0.68 0.799769
Target:  5'- --uGGGGGCCag-GGGACugAGCUACg -3'
miRNA:   3'- cagUCCCUGGagaCUUUGugUCGGUG- -5'
28385 3' -53.9 NC_005946.1 + 80353 0.69 0.750748
Target:  5'- -aCAGGGGcCCUCcgacgugGAAGC-CAGUCACg -3'
miRNA:   3'- caGUCCCU-GGAGa------CUUUGuGUCGGUG- -5'
28385 3' -53.9 NC_005946.1 + 89895 0.71 0.623843
Target:  5'- --uGGGGACCUCUGu--CGCAGUCcCa -3'
miRNA:   3'- cagUCCCUGGAGACuuuGUGUCGGuG- -5'
28385 3' -53.9 NC_005946.1 + 45494 0.74 0.497477
Target:  5'- cUCAGGGagGCgUCUGAAAaCAUGGCCAUg -3'
miRNA:   3'- cAGUCCC--UGgAGACUUU-GUGUCGGUG- -5'
28385 3' -53.9 NC_005946.1 + 48586 1.1 0.002028
Target:  5'- aGUCAGGGACCUCUGAAACACAGCCACg -3'
miRNA:   3'- -CAGUCCCUGGAGACUUUGUGUCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.