miRNA: 3'- -AGGGCAACUgGCUGCGUUGGGagucc -5'
miRNA: 3'- aGGGCA--ACuGGCuG-CGUUGGGAGUCC- -5'
miRNA: 3'- aGgGCaaCUGGCUGCGUUGGG--AGUCC- -5'
miRNA: 3'- -AGGGCAACUGGCUGCGUUGGGAGUCC- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28387 | 3' | -55.8 | NC_005946.1 | + | 63496 | 0.73 | 0.483929 |
|
Target: 5'- cUCCCGUUGA-CGACGUGACCCa---- -3' miRNA: 3'- -AGGGCAACUgGCUGCGUUGGGagucc -5' |
|||||||
| 28387 | 3' | -55.8 | NC_005946.1 | + | 81834 | 0.75 | 0.401588 |
|
Target: 5'- aCCUGUcuUGcCCG-CgGCGACCCUCAGGg -3' miRNA: 3'- aGGGCA--ACuGGCuG-CGUUGGGAGUCC- -5' |
|||||||
| 28387 | 3' | -55.8 | NC_005946.1 | + | 23765 | 0.75 | 0.367958 |
|
Target: 5'- gCgCGagGGCCGACGCGGCCUgaUCGGGa -3' miRNA: 3'- aGgGCaaCUGGCUGCGUUGGG--AGUCC- -5' |
|||||||
| 28387 | 3' | -55.8 | NC_005946.1 | + | 49715 | 1.12 | 0.001556 |
|
Target: 5'- gUCCCGUUGACCGACGCAACCCUCAGGg -3' miRNA: 3'- -AGGGCAACUGGCUGCGUUGGGAGUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home