miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28389 3' -56 NC_005946.1 + 15510 0.66 0.804589
Target:  5'- -uCACCAGCauaGCCAGCA-UAGCUa -3'
miRNA:   3'- auGUGGUCGaugUGGUCGUgGUCGAc -5'
28389 3' -56 NC_005946.1 + 3421 0.67 0.745938
Target:  5'- aGCACUAcGaCUACACCcucGGCgACUGGCUGg -3'
miRNA:   3'- aUGUGGU-C-GAUGUGG---UCG-UGGUCGAC- -5'
28389 3' -56 NC_005946.1 + 59222 0.67 0.714985
Target:  5'- uUGCGCCAGgUuuaggccagACACCGcggccuGCGCCuGCUGg -3'
miRNA:   3'- -AUGUGGUCgA---------UGUGGU------CGUGGuCGAC- -5'
28389 3' -56 NC_005946.1 + 82560 0.68 0.660907
Target:  5'- gGCACCAcGaCUGCACCAcCGCCucguccggggagaGGCUGg -3'
miRNA:   3'- aUGUGGU-C-GAUGUGGUcGUGG-------------UCGAC- -5'
28389 3' -56 NC_005946.1 + 51057 0.68 0.651256
Target:  5'- aUGCuCCAGCaguuagUGCACCAGCcucacuguuuggACCAGCa- -3'
miRNA:   3'- -AUGuGGUCG------AUGUGGUCG------------UGGUCGac -5'
28389 3' -56 NC_005946.1 + 2868 0.68 0.644815
Target:  5'- gACGCCGGCUgggccacuaggcccgACGCCGuguGCGCCAGgUa -3'
miRNA:   3'- aUGUGGUCGA---------------UGUGGU---CGUGGUCgAc -5'
28389 3' -56 NC_005946.1 + 2657 0.69 0.597584
Target:  5'- gGCcCCuGCUACGCCgggGGCugCAGCg- -3'
miRNA:   3'- aUGuGGuCGAUGUGG---UCGugGUCGac -5'
28389 3' -56 NC_005946.1 + 51495 0.72 0.434709
Target:  5'- aGCACCGGCagugacUGCAaaGGCACCAGCc- -3'
miRNA:   3'- aUGUGGUCG------AUGUggUCGUGGUCGac -5'
28389 3' -56 NC_005946.1 + 51372 0.73 0.371821
Target:  5'- aGCACCAGCagugacUGCAaaGGCACCAGCc- -3'
miRNA:   3'- aUGUGGUCG------AUGUggUCGUGGUCGac -5'
28389 3' -56 NC_005946.1 + 51092 0.75 0.300541
Target:  5'- aGCACCAGCagugACugCaaaGGCACCAGCa- -3'
miRNA:   3'- aUGUGGUCGa---UGugG---UCGUGGUCGac -5'
28389 3' -56 NC_005946.1 + 51150 0.88 0.043931
Target:  5'- nGCACCAGCUGCACCAgcuGCACCAGCn- -3'
miRNA:   3'- aUGUGGUCGAUGUGGU---CGUGGUCGac -5'
28389 3' -56 NC_005946.1 + 51198 0.91 0.02335
Target:  5'- aGCACCAGCUGCACCAGCACCAGn-- -3'
miRNA:   3'- aUGUGGUCGAUGUGGUCGUGGUCgac -5'
28389 3' -56 NC_005946.1 + 51123 1.03 0.003637
Target:  5'- cUACACCAGCUACACCAGCACCAGCUa -3'
miRNA:   3'- -AUGUGGUCGAUGUGGUCGUGGUCGAc -5'
28389 3' -56 NC_005946.1 + 51403 1.03 0.003637
Target:  5'- cUGCACCAGCUACACCAGCACCAGCUa -3'
miRNA:   3'- -AUGUGGUCGAUGUGGUCGUGGUCGAc -5'
28389 3' -56 NC_005946.1 + 51228 1.05 0.002417
Target:  5'- aGCACCAGCUGCACCAGCACCAGCUGc -3'
miRNA:   3'- aUGUGGUCGAUGUGGUCGUGGUCGAC- -5'
28389 3' -56 NC_005946.1 + 51258 1.05 0.002417
Target:  5'- aGCACCAGCUGCACCAGCACCAGCUGc -3'
miRNA:   3'- aUGUGGUCGAUGUGGUCGUGGUCGAC- -5'
28389 3' -56 NC_005946.1 + 51175 1.06 0.002348
Target:  5'- cUACACCAGCUACACCAGCACCAGCUGc -3'
miRNA:   3'- -AUGUGGUCGAUGUGGUCGUGGUCGAC- -5'
28389 3' -56 NC_005946.1 + 51288 1.06 0.002348
Target:  5'- gGCACCAGCUGCACCAGCACCAGCUGc -3'
miRNA:   3'- aUGUGGUCGAUGUGGUCGUGGUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.