miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28390 3' -59.2 NC_005946.1 + 94762 0.66 0.657072
Target:  5'- gACCAGCGCCccuuggguGGCgGguCaCAGCAUCAa -3'
miRNA:   3'- -UGGUCGUGG--------UCGaCguG-GUCGUGGUc -5'
28390 3' -59.2 NC_005946.1 + 67557 0.66 0.657072
Target:  5'- aGCUggAGgACCGGCUGgGCCcuGCACUGGu -3'
miRNA:   3'- -UGG--UCgUGGUCGACgUGGu-CGUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 9170 0.66 0.636147
Target:  5'- -gCAGC-CCAGCacGCcguCCuGCACCAGg -3'
miRNA:   3'- ugGUCGuGGUCGa-CGu--GGuCGUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 79006 0.66 0.625675
Target:  5'- aGCCGGCgGCCacggaGGCgGCguacGCCAGgGCCGGg -3'
miRNA:   3'- -UGGUCG-UGG-----UCGaCG----UGGUCgUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51546 0.67 0.594324
Target:  5'- uGCCAaagcuGCACCaucAGUuaaUGCuCCAGCACCAu -3'
miRNA:   3'- -UGGU-----CGUGG---UCG---ACGuGGUCGUGGUc -5'
28390 3' -59.2 NC_005946.1 + 76367 0.67 0.552958
Target:  5'- aACCGGUcCCAGCgggGCGCCuggaucucagGGC-CCGGa -3'
miRNA:   3'- -UGGUCGuGGUCGa--CGUGG----------UCGuGGUC- -5'
28390 3' -59.2 NC_005946.1 + 82565 0.7 0.382642
Target:  5'- gACCAgGCACCAcGaCUGCACCAcCGCCu- -3'
miRNA:   3'- -UGGU-CGUGGU-C-GACGUGGUcGUGGuc -5'
28390 3' -59.2 NC_005946.1 + 2661 0.71 0.365942
Target:  5'- gGCCGGCcccugcuacGCCGGggGCugCAGCGCCu- -3'
miRNA:   3'- -UGGUCG---------UGGUCgaCGugGUCGUGGuc -5'
28390 3' -59.2 NC_005946.1 + 51069 0.72 0.304291
Target:  5'- cACCAGCAguuaaugcuCCAGCaguuagUGCACCAGCcucacuguuuggACCAGc -3'
miRNA:   3'- -UGGUCGU---------GGUCG------ACGUGGUCG------------UGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51139 0.72 0.29018
Target:  5'- -----nACCAGCUGCACCAGCcuacACCAGc -3'
miRNA:   3'- uggucgUGGUCGACGUGGUCG----UGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51187 0.77 0.139399
Target:  5'- cACCAGCACCAGCUaCACCAGCu---- -3'
miRNA:   3'- -UGGUCGUGGUCGAcGUGGUCGugguc -5'
28390 3' -59.2 NC_005946.1 + 51415 0.78 0.132219
Target:  5'- gACaGGCACCAGCUGCACCAGCu---- -3'
miRNA:   3'- -UGgUCGUGGUCGACGUGGUCGugguc -5'
28390 3' -59.2 NC_005946.1 + 51498 0.78 0.115738
Target:  5'- uCCAGCACCGGCagugacUGCAaaGGCACCAGc -3'
miRNA:   3'- uGGUCGUGGUCG------ACGUggUCGUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51111 0.96 0.006533
Target:  5'- cACCAGCACCAGCUaCACCAGCACCAGc -3'
miRNA:   3'- -UGGUCGUGGUCGAcGUGGUCGUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51391 0.96 0.006533
Target:  5'- cACCAGCACCAGCUaCACCAGCACCAGc -3'
miRNA:   3'- -UGGUCGUGGUCGAcGUGGUCGUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51163 0.98 0.004517
Target:  5'- cACCAGCACCAGCUGCACCAGCugCAc -3'
miRNA:   3'- -UGGUCGUGGUCGACGUGGUCGugGUc -5'
28390 3' -59.2 NC_005946.1 + 51217 1.07 0.001001
Target:  5'- cACCAGCACCAGCUGCACCAGCACCAGc -3'
miRNA:   3'- -UGGUCGUGGUCGACGUGGUCGUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51247 1.07 0.001001
Target:  5'- cACCAGCACCAGCUGCACCAGCACCAGc -3'
miRNA:   3'- -UGGUCGUGGUCGACGUGGUCGUGGUC- -5'
28390 3' -59.2 NC_005946.1 + 51277 1.07 0.001001
Target:  5'- cACCAGCACCAGCUGCACCAGCACCAGc -3'
miRNA:   3'- -UGGUCGUGGUCGACGUGGUCGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.