miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28390 5' -59 NC_005946.1 + 2647 0.66 0.610197
Target:  5'- aCGCCGGggGCugCAGCGCCuucacacccaggGGCaccUGCGg -3'
miRNA:   3'- -GUGGUCgaCGugGUCGUGG------------UCG---ACGU- -5'
28390 5' -59 NC_005946.1 + 67549 0.71 0.352683
Target:  5'- gACCGGCUGgGCCcuGCACUGGUgGCAg -3'
miRNA:   3'- gUGGUCGACgUGGu-CGUGGUCGaCGU- -5'
28390 5' -59 NC_005946.1 + 51410 0.72 0.306689
Target:  5'- gCACCAGCUGCACCAGCuacACCAn----- -3'
miRNA:   3'- -GUGGUCGACGUGGUCG---UGGUcgacgu -5'
28390 5' -59 NC_005946.1 + 51512 0.73 0.265429
Target:  5'- cCAUCAGUuaaUGCuCCAGCACCGGCagugacUGCAa -3'
miRNA:   3'- -GUGGUCG---ACGuGGUCGUGGUCG------ACGU- -5'
28390 5' -59 NC_005946.1 + 51106 0.86 0.035393
Target:  5'- gCACCAGCUaCACCAGCACCAGCagugacUGCAa -3'
miRNA:   3'- -GUGGUCGAcGUGGUCGUGGUCG------ACGU- -5'
28390 5' -59 NC_005946.1 + 51386 0.86 0.035393
Target:  5'- gCACCAGCUaCACCAGCACCAGCagugacUGCAa -3'
miRNA:   3'- -GUGGUCGAcGUGGUCGUGGUCG------ACGU- -5'
28390 5' -59 NC_005946.1 + 51197 0.96 0.006089
Target:  5'- gCACCAGCUGCACCAGCACCAGCUaCAc -3'
miRNA:   3'- -GUGGUCGACGUGGUCGUGGUCGAcGU- -5'
28390 5' -59 NC_005946.1 + 51158 0.98 0.004201
Target:  5'- gCACCAGCUGCACCAgcuGCACCAGCUGCAc -3'
miRNA:   3'- -GUGGUCGACGUGGU---CGUGGUCGACGU- -5'
28390 5' -59 NC_005946.1 + 51227 1.07 0.000923
Target:  5'- gCACCAGCUGCACCAGCACCAGCUGCAc -3'
miRNA:   3'- -GUGGUCGACGUGGUCGUGGUCGACGU- -5'
28390 5' -59 NC_005946.1 + 51257 1.07 0.000923
Target:  5'- gCACCAGCUGCACCAGCACCAGCUGCAc -3'
miRNA:   3'- -GUGGUCGACGUGGUCGUGGUCGACGU- -5'
28390 5' -59 NC_005946.1 + 51287 1.07 0.000923
Target:  5'- gCACCAGCUGCACCAGCACCAGCUGCAc -3'
miRNA:   3'- -GUGGUCGACGUGGUCGUGGUCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.