miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28391 3' -57.1 NC_005946.1 + 51389 0.66 0.707834
Target:  5'- -cCA-GCACCAGCUacaccaGCACCAGCagugacUGCAa -3'
miRNA:   3'- cuGUcCGUGGUCGA------CGUGGUCG------AUGU- -5'
28391 3' -57.1 NC_005946.1 + 28687 0.67 0.686903
Target:  5'- uGCAGGC-CCAGCaGUagACCAGgUACc -3'
miRNA:   3'- cUGUCCGuGGUCGaCG--UGGUCgAUGu -5'
28391 3' -57.1 NC_005946.1 + 82566 0.67 0.686903
Target:  5'- aGAcCAGGCACCAcGaCUGCACCAccGCc--- -3'
miRNA:   3'- -CU-GUCCGUGGU-C-GACGUGGU--CGaugu -5'
28391 3' -57.1 NC_005946.1 + 51073 0.67 0.676359
Target:  5'- --aAGGCACCAGCaguuaaUGCuCCAGCa--- -3'
miRNA:   3'- cugUCCGUGGUCG------ACGuGGUCGaugu -5'
28391 3' -57.1 NC_005946.1 + 10265 0.67 0.665775
Target:  5'- cGACGGGCACCAGgaGggaaGCCuccuCUACGc -3'
miRNA:   3'- -CUGUCCGUGGUCgaCg---UGGuc--GAUGU- -5'
28391 3' -57.1 NC_005946.1 + 35259 0.67 0.655163
Target:  5'- gGACGGGCAUgGGCgagGa--CGGCUGCGg -3'
miRNA:   3'- -CUGUCCGUGgUCGa--CgugGUCGAUGU- -5'
28391 3' -57.1 NC_005946.1 + 68272 0.68 0.633887
Target:  5'- uGACGGGguCCuuguuGCUGC-CCAGgaGCGu -3'
miRNA:   3'- -CUGUCCguGGu----CGACGuGGUCgaUGU- -5'
28391 3' -57.1 NC_005946.1 + 37340 0.69 0.549393
Target:  5'- cGGCGGGCACCAaagcGuCUGCuauCCAGCagUACu -3'
miRNA:   3'- -CUGUCCGUGGU----C-GACGu--GGUCG--AUGu -5'
28391 3' -57.1 NC_005946.1 + 2873 0.7 0.518513
Target:  5'- cGCAGGaCGCCGGCUGgGCCA-CUAg- -3'
miRNA:   3'- cUGUCC-GUGGUCGACgUGGUcGAUgu -5'
28391 3' -57.1 NC_005946.1 + 51182 0.7 0.518513
Target:  5'- -----nCACCAGCUaCACCAGCUACAc -3'
miRNA:   3'- cuguccGUGGUCGAcGUGGUCGAUGU- -5'
28391 3' -57.1 NC_005946.1 + 51128 0.73 0.328365
Target:  5'- -cCAGccuaCACCAGCUacaccaGCACCAGCUACAc -3'
miRNA:   3'- cuGUCc---GUGGUCGA------CGUGGUCGAUGU- -5'
28391 3' -57.1 NC_005946.1 + 51204 0.79 0.14982
Target:  5'- uGCAccaGCACCAGCUGCACCAGCa--- -3'
miRNA:   3'- cUGUc--CGUGGUCGACGUGGUCGaugu -5'
28391 3' -57.1 NC_005946.1 + 51234 0.79 0.14982
Target:  5'- uGCAccaGCACCAGCUGCACCAGCa--- -3'
miRNA:   3'- cUGUc--CGUGGUCGACGUGGUCGaugu -5'
28391 3' -57.1 NC_005946.1 + 51264 0.79 0.14982
Target:  5'- uGCAccaGCACCAGCUGCACCAGCa--- -3'
miRNA:   3'- cUGUc--CGUGGUCGACGUGGUCGaugu -5'
28391 3' -57.1 NC_005946.1 + 51155 0.9 0.023081
Target:  5'- -cCAGcuGCACCAGCUGCACCAGCUGCAc -3'
miRNA:   3'- cuGUC--CGUGGUCGACGUGGUCGAUGU- -5'
28391 3' -57.1 NC_005946.1 + 51293 0.97 0.008445
Target:  5'- gGACAGGCACCAGCUGCACCAGCa--- -3'
miRNA:   3'- -CUGUCCGUGGUCGACGUGGUCGaugu -5'
28391 3' -57.1 NC_005946.1 + 51416 1.08 0.001369
Target:  5'- gGACAGGCACCAGCUGCACCAGCUACAc -3'
miRNA:   3'- -CUGUCCGUGGUCGACGUGGUCGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.