Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28392 | 3' | -55.8 | NC_005946.1 | + | 31373 | 0.66 | 0.823363 |
|
Target: 5'- -gUGGCUgucaugacaGAGacGUAGcgCUCAGAGUCUGg -3' miRNA: 3'- caACCGG---------CUC--CGUCa-GAGUCUCAGAC- -5' |
|||||||
| 28392 | 3' | -55.8 | NC_005946.1 | + | 28843 | 0.66 | 0.814442 |
|
Target: 5'- --aGGCCGuguAGGCgucgucgcaAGUCagcgUAGAGUCUGg -3' miRNA: 3'- caaCCGGC---UCCG---------UCAGa---GUCUCAGAC- -5' |
|||||||
| 28392 | 3' | -55.8 | NC_005946.1 | + | 28294 | 0.67 | 0.786647 |
|
Target: 5'- gGUUGGCgGAaccGGCAGagggCuuucugcccgUCAGGGUCUGg -3' miRNA: 3'- -CAACCGgCU---CCGUCa---G----------AGUCUCAGAC- -5' |
|||||||
| 28392 | 3' | -55.8 | NC_005946.1 | + | 70219 | 0.68 | 0.727303 |
|
Target: 5'- ----cUCGGGGCAGgccCUCAGAGUCUu -3' miRNA: 3'- caaccGGCUCCGUCa--GAGUCUCAGAc -5' |
|||||||
| 28392 | 3' | -55.8 | NC_005946.1 | + | 38310 | 0.7 | 0.622395 |
|
Target: 5'- -aUGGCCGGGGgaaAGUCUUcuuGGGUCUu -3' miRNA: 3'- caACCGGCUCCg--UCAGAGu--CUCAGAc -5' |
|||||||
| 28392 | 3' | -55.8 | NC_005946.1 | + | 53323 | 1.09 | 0.001761 |
|
Target: 5'- cGUUGGCCGAGGCAGUCUCAGAGUCUGa -3' miRNA: 3'- -CAACCGGCUCCGUCAGAGUCUCAGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home