Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28393 | 5' | -54.2 | NC_005946.1 | + | 43990 | 0.68 | 0.821691 |
Target: 5'- uGCCAGUaGGCAGacaUGUCUGCGuCc -3' miRNA: 3'- gCGGUCAcCUGUCcaaACAGACGCuG- -5' |
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28393 | 5' | -54.2 | NC_005946.1 | + | 91754 | 0.69 | 0.784656 |
Target: 5'- uGCUGGUGGACAuGUggcuggcGUUUGCGAUg -3' miRNA: 3'- gCGGUCACCUGUcCAaa-----CAGACGCUG- -5' |
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28393 | 5' | -54.2 | NC_005946.1 | + | 84120 | 0.7 | 0.683113 |
Target: 5'- uGUCGGUGGugGGGUgguUCUGCcACg -3' miRNA: 3'- gCGGUCACCugUCCAaacAGACGcUG- -5' |
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28393 | 5' | -54.2 | NC_005946.1 | + | 71832 | 0.71 | 0.672538 |
Target: 5'- gGCCAGaGGACGGGaggagGUCccgcgggacugUGCGACg -3' miRNA: 3'- gCGGUCaCCUGUCCaaa--CAG-----------ACGCUG- -5' |
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28393 | 5' | -54.2 | NC_005946.1 | + | 53749 | 1.09 | 0.002464 |
Target: 5'- aCGCCAGUGGACAGGUUUGUCUGCGACc -3' miRNA: 3'- -GCGGUCACCUGUCCAAACAGACGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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