miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28394 5' -57.7 NC_005946.1 + 8845 0.66 0.783815
Target:  5'- aCGAAaaCgGAGGCGGCCUGgUCaCCg- -3'
miRNA:   3'- gGCUUg-GgUUUCGCCGGACgAG-GGac -5'
28394 5' -57.7 NC_005946.1 + 67438 0.66 0.783815
Target:  5'- -gGAACCCcuGGUGGCguagaggUGgUCCCUGa -3'
miRNA:   3'- ggCUUGGGuuUCGCCGg------ACgAGGGAC- -5'
28394 5' -57.7 NC_005946.1 + 48618 0.66 0.77442
Target:  5'- aUGGccGCCCucuccuCGGCCUGCUCCUc- -3'
miRNA:   3'- gGCU--UGGGuuuc--GCCGGACGAGGGac -5'
28394 5' -57.7 NC_005946.1 + 12034 0.66 0.76872
Target:  5'- aCGAGCCCucugaccugaccagcAAGGaGGCCUGCaggcggUUCCUGu -3'
miRNA:   3'- gGCUUGGG---------------UUUCgCCGGACG------AGGGAC- -5'
28394 5' -57.7 NC_005946.1 + 95130 0.66 0.763936
Target:  5'- cCCGGACgUCAugcAGGCGGuCCUgaggaucGCUCCCa- -3'
miRNA:   3'- -GGCUUG-GGU---UUCGCC-GGA-------CGAGGGac -5'
28394 5' -57.7 NC_005946.1 + 64836 0.66 0.745492
Target:  5'- cCCGAGaucCCCGcGAGC-GCCaguUGCUCCCUu -3'
miRNA:   3'- -GGCUU---GGGU-UUCGcCGG---ACGAGGGAc -5'
28394 5' -57.7 NC_005946.1 + 76570 0.66 0.735633
Target:  5'- gUCGGGCCCGuggGAGCGGCUggGC-CUCa- -3'
miRNA:   3'- -GGCUUGGGU---UUCGCCGGa-CGaGGGac -5'
28394 5' -57.7 NC_005946.1 + 35611 0.67 0.725682
Target:  5'- aCGGuCCCGGccGCGGCCUggGCUUCCa- -3'
miRNA:   3'- gGCUuGGGUUu-CGCCGGA--CGAGGGac -5'
28394 5' -57.7 NC_005946.1 + 98197 0.67 0.725682
Target:  5'- gUGGA-CUggGGCGGCCUGCa-CCUGc -3'
miRNA:   3'- gGCUUgGGuuUCGCCGGACGagGGAC- -5'
28394 5' -57.7 NC_005946.1 + 13523 0.67 0.69537
Target:  5'- gCGAguACgUCAAcggcAGCGGCCUG-UCCCUGc -3'
miRNA:   3'- gGCU--UG-GGUU----UCGCCGGACgAGGGAC- -5'
28394 5' -57.7 NC_005946.1 + 102035 0.67 0.689241
Target:  5'- aCGAGCCUcucgGAgacggcugccagcucGGgGGCCUGCUCgCCUc -3'
miRNA:   3'- gGCUUGGG----UU---------------UCgCCGGACGAG-GGAc -5'
28394 5' -57.7 NC_005946.1 + 22178 0.68 0.623165
Target:  5'- gCUGGcuGCCCuggccGCGGCC-GCUcCCCUGa -3'
miRNA:   3'- -GGCU--UGGGuuu--CGCCGGaCGA-GGGAC- -5'
28394 5' -57.7 NC_005946.1 + 69278 0.68 0.611777
Target:  5'- cUCGGACCCuaugaugGAAGCGGCCUuCUCUa-- -3'
miRNA:   3'- -GGCUUGGG-------UUUCGCCGGAcGAGGgac -5'
28394 5' -57.7 NC_005946.1 + 75707 0.7 0.521154
Target:  5'- uUGGACuCCAGgaugucGGCGGCCU-CUCCCUu -3'
miRNA:   3'- gGCUUG-GGUU------UCGCCGGAcGAGGGAc -5'
28394 5' -57.7 NC_005946.1 + 36582 0.71 0.476327
Target:  5'- uCCGAACCCGcuuuGGCGGguccauucucgagguCCaggggaGCUCCCUGa -3'
miRNA:   3'- -GGCUUGGGUu---UCGCC---------------GGa-----CGAGGGAC- -5'
28394 5' -57.7 NC_005946.1 + 101968 0.71 0.457438
Target:  5'- gCUGAGCCUugacgAGGGUgcccuuuuccaucagGGCCUGCUUCCUGc -3'
miRNA:   3'- -GGCUUGGG-----UUUCG---------------CCGGACGAGGGAC- -5'
28394 5' -57.7 NC_005946.1 + 20425 0.72 0.391288
Target:  5'- gCCGGccaagaugGCCCAGauGGCGGCCgcgGCaUCCCa- -3'
miRNA:   3'- -GGCU--------UGGGUU--UCGCCGGa--CG-AGGGac -5'
28394 5' -57.7 NC_005946.1 + 57055 1.09 0.001302
Target:  5'- uCCGAACCCAAAGCGGCCUGCUCCCUGu -3'
miRNA:   3'- -GGCUUGGGUUUCGCCGGACGAGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.