miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28395 3' -49.4 NC_005946.1 + 18645 0.73 0.865131
Target:  5'- -aGUCUCCcaGGAUCUUUACAuUGUCGa -3'
miRNA:   3'- ugCAGAGGc-UCUAGAAAUGU-GCAGCg -5'
28395 3' -49.4 NC_005946.1 + 50064 0.68 0.984782
Target:  5'- ---cCUCUGGGAUCUggUUGCugGUCa- -3'
miRNA:   3'- ugcaGAGGCUCUAGA--AAUGugCAGcg -5'
28395 3' -49.4 NC_005946.1 + 57352 1.13 0.005194
Target:  5'- aACGUCUCCGAGAUCUUUACACGUCGCg -3'
miRNA:   3'- -UGCAGAGGCUCUAGAAAUGUGCAGCG- -5'
28395 3' -49.4 NC_005946.1 + 59833 0.67 0.992057
Target:  5'- aGCGUCUCCuGGAgCUUgacgGCcgugguacccuugACGUCGUa -3'
miRNA:   3'- -UGCAGAGGcUCUaGAAa---UG-------------UGCAGCG- -5'
28395 3' -49.4 NC_005946.1 + 67785 0.71 0.926606
Target:  5'- uCGUCUCCGGGccuGUCUUUggGCAUGgCGUu -3'
miRNA:   3'- uGCAGAGGCUC---UAGAAA--UGUGCaGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.