miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28404 5' -57.1 NC_005946.1 + 40125 0.66 0.787352
Target:  5'- gGCGGGCauaaaCagaGGGgGCCUgACGGGGAc -3'
miRNA:   3'- gUGCCUGg----Gg--CUUgUGGAaUGCCCCU- -5'
28404 5' -57.1 NC_005946.1 + 14316 0.67 0.729809
Target:  5'- gACGGGcggcagguacauCCCCGAgggcuACGCCgacAUGGGGGa -3'
miRNA:   3'- gUGCCU------------GGGGCU-----UGUGGaa-UGCCCCU- -5'
28404 5' -57.1 NC_005946.1 + 76926 0.68 0.719865
Target:  5'- -cCGGAUCCCaaGAGgACCgucCGGGGAc -3'
miRNA:   3'- guGCCUGGGG--CUUgUGGaauGCCCCU- -5'
28404 5' -57.1 NC_005946.1 + 7978 0.68 0.709843
Target:  5'- -cUGGGCCCCGcACGCgUugcacgcagagUACGGGGc -3'
miRNA:   3'- guGCCUGGGGCuUGUGgA-----------AUGCCCCu -5'
28404 5' -57.1 NC_005946.1 + 9722 0.69 0.658918
Target:  5'- -cUGGGCCCUGGACAugacggccauCCUguuguCGGGGGu -3'
miRNA:   3'- guGCCUGGGGCUUGU----------GGAau---GCCCCU- -5'
28404 5' -57.1 NC_005946.1 + 23166 0.69 0.658918
Target:  5'- cCAgGGACCcuggccgcuCCGGACGCCUcaaagcuguUugGGGGu -3'
miRNA:   3'- -GUgCCUGG---------GGCUUGUGGA---------AugCCCCu -5'
28404 5' -57.1 NC_005946.1 + 61312 0.69 0.658918
Target:  5'- aCAgGGACgCCUGGugugugguggGCACCUacuccaagGCGGGGAc -3'
miRNA:   3'- -GUgCCUG-GGGCU----------UGUGGAa-------UGCCCCU- -5'
28404 5' -57.1 NC_005946.1 + 26655 0.69 0.638334
Target:  5'- uGCuGGCCCCGuACACCagccaGGGGAc -3'
miRNA:   3'- gUGcCUGGGGCuUGUGGaaug-CCCCU- -5'
28404 5' -57.1 NC_005946.1 + 79937 0.71 0.516502
Target:  5'- -cUGGACgCCGAgGCGCCcacgGCGGGGGg -3'
miRNA:   3'- guGCCUGgGGCU-UGUGGaa--UGCCCCU- -5'
28404 5' -57.1 NC_005946.1 + 85039 0.73 0.431515
Target:  5'- aCACGGACgCgGAACACCUcAUGGGc- -3'
miRNA:   3'- -GUGCCUGgGgCUUGUGGAaUGCCCcu -5'
28404 5' -57.1 NC_005946.1 + 64124 1.08 0.001862
Target:  5'- gCACGGACCCCGAACACCUUACGGGGAg -3'
miRNA:   3'- -GUGCCUGGGGCUUGUGGAAUGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.