miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28405	3'	-49.5	NC_005946.1	+	32798	0.66	0.992779
	Target:  5'- aCGUCCACcAGCUUaaUCUGGaugGAGGg -3' miRNA:   3'- -GCAGGUGuUUGGAc-AGAUCgaaCUCC- -5'
28405	3'	-49.5	NC_005946.1	+	82203	0.67	0.989009
	Target:  5'- gGUCCGCugcucacguCCUGUUUGGagggaugUGAGGu -3' miRNA:   3'- gCAGGUGuuu------GGACAGAUCga-----ACUCC- -5'
28405	3'	-49.5	NC_005946.1	+	68393	0.68	0.979523
	Target:  5'- aGUCCcaccCAGACCUGg--AGCUucuccaUGAGGu -3' miRNA:   3'- gCAGGu---GUUUGGACagaUCGA------ACUCC- -5'
28405	3'	-49.5	NC_005946.1	+	54715	0.68	0.974378
	Target:  5'- gGUCCAgGAGCCUGUgaAGCccaaaaAGGg -3' miRNA:   3'- gCAGGUgUUUGGACAgaUCGaac---UCC- -5'
28405	3'	-49.5	NC_005946.1	+	102489	0.68	0.97148
	Target:  5'- --cCCAUggGCCUugaugAGCUUGAGGg -3' miRNA:   3'- gcaGGUGuuUGGAcaga-UCGAACUCC- -5'
28405	3'	-49.5	NC_005946.1	+	13011	0.7	0.934332
	Target:  5'- gGUCCAgGAACCUGUacccuucagAGUUUGAcGGc -3' miRNA:   3'- gCAGGUgUUUGGACAga-------UCGAACU-CC- -5'
28405	3'	-49.5	NC_005946.1	+	35110	0.77	0.618434
	Target:  5'- aCGUCCAUccACCUGUCUAGCUg---- -3' miRNA:   3'- -GCAGGUGuuUGGACAGAUCGAacucc -5'
28405	3'	-49.5	NC_005946.1	+	65226	1.13	0.004875
	Target:  5'- cCGUCCACAAACCUGUCUAGCUUGAGGg -3' miRNA:   3'- -GCAGGUGUUUGGACAGAUCGAACUCC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home