miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28405 5' -55.9 NC_005946.1 + 42187 0.66 0.790904
Target:  5'- -cCCUGGGgCCACUcgggccacUCGGGCCCa--- -3'
miRNA:   3'- cuGGACUUgGGUGA--------AGUCCGGGgaau -5'
28405 5' -55.9 NC_005946.1 + 42305 0.67 0.771613
Target:  5'- uACCUG-ACCC-CUg-GGGCCCUUUGg -3'
miRNA:   3'- cUGGACuUGGGuGAagUCCGGGGAAU- -5'
28405 5' -55.9 NC_005946.1 + 6309 0.67 0.761759
Target:  5'- uGCCUGGACCCAC----GGCCCg--- -3'
miRNA:   3'- cUGGACUUGGGUGaaguCCGGGgaau -5'
28405 5' -55.9 NC_005946.1 + 73262 0.67 0.755787
Target:  5'- cGACCUGGccaacaagaggguggACgCCAC--CGGGCCCCUc- -3'
miRNA:   3'- -CUGGACU---------------UG-GGUGaaGUCCGGGGAau -5'
28405 5' -55.9 NC_005946.1 + 67599 0.67 0.751781
Target:  5'- aGCCUGAuccACCCGCaagugggaAGGUCCCUg- -3'
miRNA:   3'- cUGGACU---UGGGUGaag-----UCCGGGGAau -5'
28405 5' -55.9 NC_005946.1 + 18680 0.67 0.741687
Target:  5'- aGCCUcu-CCCGCUUCGGGUagcUCCUUGa -3'
miRNA:   3'- cUGGAcuuGGGUGAAGUCCG---GGGAAU- -5'
28405 5' -55.9 NC_005946.1 + 18176 0.67 0.741687
Target:  5'- gGACUuuuuUGAGCCCAUUUC-GGCCuuggCCUUGa -3'
miRNA:   3'- -CUGG----ACUUGGGUGAAGuCCGG----GGAAU- -5'
28405 5' -55.9 NC_005946.1 + 83208 0.68 0.668702
Target:  5'- cACCUcGAGgCC-UUUCAGGCCCCg-- -3'
miRNA:   3'- cUGGA-CUUgGGuGAAGUCCGGGGaau -5'
28405 5' -55.9 NC_005946.1 + 42370 0.7 0.572925
Target:  5'- gGACCaacgGGACCCuuuggGCcgUCGGGCCCCg-- -3'
miRNA:   3'- -CUGGa---CUUGGG-----UGa-AGUCCGGGGaau -5'
28405 5' -55.9 NC_005946.1 + 96279 0.71 0.531186
Target:  5'- gGACCgUGGACCCuC-UCGGGCUCCUc- -3'
miRNA:   3'- -CUGG-ACUUGGGuGaAGUCCGGGGAau -5'
28405 5' -55.9 NC_005946.1 + 83120 0.76 0.278566
Target:  5'- -uCCUGAgggaGCCCACUccCAGGCCCCa-- -3'
miRNA:   3'- cuGGACU----UGGGUGAa-GUCCGGGGaau -5'
28405 5' -55.9 NC_005946.1 + 65192 1.06 0.002281
Target:  5'- aGACCUGAACCCACUUCAGGCCCCUUAu -3'
miRNA:   3'- -CUGGACUUGGGUGAAGUCCGGGGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.