miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28407 5' -56.3 NC_005946.1 + 79366 0.66 0.853231
Target:  5'- gCCGUCugCCUCcuguucaugcccAUGgGGAUGGUcGAg -3'
miRNA:   3'- gGGCAGugGGAG------------UGCgUCUGCCAuCU- -5'
28407 5' -56.3 NC_005946.1 + 78934 0.66 0.837034
Target:  5'- uCCCGUCugCCUgGCGuCGGGCuuGUGa- -3'
miRNA:   3'- -GGGCAGugGGAgUGC-GUCUGc-CAUcu -5'
28407 5' -56.3 NC_005946.1 + 11330 0.66 0.828648
Target:  5'- gCCGcCACCCUCGCGCcGGCu----- -3'
miRNA:   3'- gGGCaGUGGGAGUGCGuCUGccaucu -5'
28407 5' -56.3 NC_005946.1 + 95131 0.66 0.828648
Target:  5'- gCCCGga--CgUCAUGCAGGCGGUccugaGGAu -3'
miRNA:   3'- -GGGCagugGgAGUGCGUCUGCCA-----UCU- -5'
28407 5' -56.3 NC_005946.1 + 47890 0.67 0.793368
Target:  5'- gCCC-UCACCCUCAgGgAGAU-GUAGGc -3'
miRNA:   3'- -GGGcAGUGGGAGUgCgUCUGcCAUCU- -5'
28407 5' -56.3 NC_005946.1 + 62214 0.68 0.746016
Target:  5'- aCCUGuUUACCCUCGCGCc--CGGgGGAa -3'
miRNA:   3'- -GGGC-AGUGGGAGUGCGucuGCCaUCU- -5'
28407 5' -56.3 NC_005946.1 + 64291 0.68 0.736203
Target:  5'- aUCGUCAgCCUCguaGUAGGCGGUGu- -3'
miRNA:   3'- gGGCAGUgGGAGug-CGUCUGCCAUcu -5'
28407 5' -56.3 NC_005946.1 + 93898 0.69 0.706252
Target:  5'- aCCGUCcugggugaugaACCCguggC-CGCAG-CGGUAGAa -3'
miRNA:   3'- gGGCAG-----------UGGGa---GuGCGUCuGCCAUCU- -5'
28407 5' -56.3 NC_005946.1 + 26990 0.69 0.706252
Target:  5'- aUCCGUCACCCUCuuuagccUGUGGGCcuuGGUGGc -3'
miRNA:   3'- -GGGCAGUGGGAGu------GCGUCUG---CCAUCu -5'
28407 5' -56.3 NC_005946.1 + 71900 0.7 0.644873
Target:  5'- aCCCGUCgugcgcggggGCCCUUGC-CAGGagGGUAGAg -3'
miRNA:   3'- -GGGCAG----------UGGGAGUGcGUCUg-CCAUCU- -5'
28407 5' -56.3 NC_005946.1 + 25801 0.7 0.644873
Target:  5'- cCCCGUCACguCCUCGgaccCGgAGGUGGUGGAc -3'
miRNA:   3'- -GGGCAGUG--GGAGU----GCgUCUGCCAUCU- -5'
28407 5' -56.3 NC_005946.1 + 16606 0.71 0.5872
Target:  5'- cCCCGUCAacgcagacucuccucCCCUCACaGCAGA-GG-AGAa -3'
miRNA:   3'- -GGGCAGU---------------GGGAGUG-CGUCUgCCaUCU- -5'
28407 5' -56.3 NC_005946.1 + 102945 0.71 0.552604
Target:  5'- cCCCGUgGCCgUagagguaGCAGAUGGUAGGa -3'
miRNA:   3'- -GGGCAgUGGgAgug----CGUCUGCCAUCU- -5'
28407 5' -56.3 NC_005946.1 + 59369 0.72 0.506855
Target:  5'- gCCCGUCACCCUCACGUcgcccucuacauCGGUc-- -3'
miRNA:   3'- -GGGCAGUGGGAGUGCGucu---------GCCAucu -5'
28407 5' -56.3 NC_005946.1 + 67315 1.11 0.001633
Target:  5'- gCCCGUCACCCUCACGCAGACGGUAGAa -3'
miRNA:   3'- -GGGCAGUGGGAGUGCGUCUGCCAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.