miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28408 3' -59.7 NC_005946.1 + 56063 0.66 0.637461
Target:  5'- aGGGUgaGGGUGGCCCUgUCU--ACGUUCAg -3'
miRNA:   3'- -CCCG--UCCAUCGGGG-AGAacUGCGGGU- -5'
28408 3' -59.7 NC_005946.1 + 26026 0.66 0.637461
Target:  5'- aGGGUAGG--GCaCCCaUCUUuaaagacggcGGCGCCCGg -3'
miRNA:   3'- -CCCGUCCauCG-GGG-AGAA----------CUGCGGGU- -5'
28408 3' -59.7 NC_005946.1 + 90668 0.66 0.6313
Target:  5'- -aGCGGGaGGCCCUUggucucgagguccucCUUGACGCUCu -3'
miRNA:   3'- ccCGUCCaUCGGGGA---------------GAACUGCGGGu -5'
28408 3' -59.7 NC_005946.1 + 102062 0.66 0.627193
Target:  5'- aGGCugGGGUccaGGCCCCuggUCUUGACgaGCCUc -3'
miRNA:   3'- cCCG--UCCA---UCGGGG---AGAACUG--CGGGu -5'
28408 3' -59.7 NC_005946.1 + 23861 0.67 0.59542
Target:  5'- cGGGCGGGa---CCCUCUUGACaaggauguuguggGCCUu -3'
miRNA:   3'- -CCCGUCCaucgGGGAGAACUG-------------CGGGu -5'
28408 3' -59.7 NC_005946.1 + 45701 0.67 0.580126
Target:  5'- cGGGCAGGUcuccugacucgagacGGaCCCCUCgaaacgGAgCGCgCAa -3'
miRNA:   3'- -CCCGUCCA---------------UC-GGGGAGaa----CU-GCGgGU- -5'
28408 3' -59.7 NC_005946.1 + 75256 0.67 0.57606
Target:  5'- uGGGCuauccuGUcGCCCCUCUUGAC-CCgAa -3'
miRNA:   3'- -CCCGuc----CAuCGGGGAGAACUGcGGgU- -5'
28408 3' -59.7 NC_005946.1 + 68063 0.68 0.545805
Target:  5'- aGGCAG--AGCUCCUCUUccAUGCCCAg -3'
miRNA:   3'- cCCGUCcaUCGGGGAGAAc-UGCGGGU- -5'
28408 3' -59.7 NC_005946.1 + 83867 0.68 0.53583
Target:  5'- gGGGCcGuGUGGCCCgUCUagaUGAaGCCCc -3'
miRNA:   3'- -CCCGuC-CAUCGGGgAGA---ACUgCGGGu -5'
28408 3' -59.7 NC_005946.1 + 14916 0.68 0.525919
Target:  5'- cGGuCAcGUAGgCCgUCUUGugGCCCGc -3'
miRNA:   3'- cCC-GUcCAUCgGGgAGAACugCGGGU- -5'
28408 3' -59.7 NC_005946.1 + 69201 1.1 0.000695
Target:  5'- aGGGCAGGUAGCCCCUCUUGACGCCCAu -3'
miRNA:   3'- -CCCGUCCAUCGGGGAGAACUGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.