miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28412 5' -59.4 NC_005946.1 + 11360 0.66 0.668207
Target:  5'- uACCCcguACCG--GCUCUCA-CGGGCAGa -3'
miRNA:   3'- -UGGG---UGGCugCGAGAGUgGUCCGUCg -5'
28412 5' -59.4 NC_005946.1 + 83503 0.66 0.647725
Target:  5'- cCCCACUGuucaGCccagaUCACCAcGGCAGUg -3'
miRNA:   3'- uGGGUGGCug--CGag---AGUGGU-CCGUCG- -5'
28412 5' -59.4 NC_005946.1 + 10395 0.67 0.637461
Target:  5'- gACCuCGCC-ACcCUCUCccuCCAGGCAGa -3'
miRNA:   3'- -UGG-GUGGcUGcGAGAGu--GGUCCGUCg -5'
28412 5' -59.4 NC_005946.1 + 10708 0.67 0.627193
Target:  5'- uCCCACCGugGCUgU-GCUGGGUcugacggccAGCa -3'
miRNA:   3'- uGGGUGGCugCGAgAgUGGUCCG---------UCG- -5'
28412 5' -59.4 NC_005946.1 + 18699 0.67 0.627193
Target:  5'- uCCCGCCGuACGUgacgagagccUCUCccgcuUCGGGUAGCu -3'
miRNA:   3'- uGGGUGGC-UGCG----------AGAGu----GGUCCGUCG- -5'
28412 5' -59.4 NC_005946.1 + 35897 0.68 0.525919
Target:  5'- gGCCguCCugagGAUGCaagaCACCAGGCAGCa -3'
miRNA:   3'- -UGGguGG----CUGCGaga-GUGGUCCGUCG- -5'
28412 5' -59.4 NC_005946.1 + 36189 0.69 0.495663
Target:  5'- uCCC-CCGACagccacaGC-CUCACCGGGUAGa -3'
miRNA:   3'- uGGGuGGCUG-------CGaGAGUGGUCCGUCg -5'
28412 5' -59.4 NC_005946.1 + 68178 0.69 0.487025
Target:  5'- gUCCACugccaCGACGCcCUCccaguCCAGGUAGCu -3'
miRNA:   3'- uGGGUG-----GCUGCGaGAGu----GGUCCGUCG- -5'
28412 5' -59.4 NC_005946.1 + 53527 0.7 0.449544
Target:  5'- cGCCCGugaGGUGCUUUCACguCAGGCAGCu -3'
miRNA:   3'- -UGGGUgg-CUGCGAGAGUG--GUCCGUCG- -5'
28412 5' -59.4 NC_005946.1 + 27928 0.7 0.413708
Target:  5'- gUCCugC-ACGCUCUCGCCuGGCAu- -3'
miRNA:   3'- uGGGugGcUGCGAGAGUGGuCCGUcg -5'
28412 5' -59.4 NC_005946.1 + 44588 0.71 0.408486
Target:  5'- aGCCCA-UGGCGCccagaccaauggaccUCUCGCCA-GCAGCa -3'
miRNA:   3'- -UGGGUgGCUGCG---------------AGAGUGGUcCGUCG- -5'
28412 5' -59.4 NC_005946.1 + 95440 0.73 0.303178
Target:  5'- gACCCGCCGcAgGCUCgagagcagcaGCCGGcGCGGCg -3'
miRNA:   3'- -UGGGUGGC-UgCGAGag--------UGGUC-CGUCG- -5'
28412 5' -59.4 NC_005946.1 + 72776 0.77 0.151996
Target:  5'- gGCCUGCCGggcuucuuugaggGCGCUCcCGCCAGGCuGGCg -3'
miRNA:   3'- -UGGGUGGC-------------UGCGAGaGUGGUCCG-UCG- -5'
28412 5' -59.4 NC_005946.1 + 71192 1.1 0.000777
Target:  5'- gACCCACCGACGCUCUCACCAGGCAGCc -3'
miRNA:   3'- -UGGGUGGCUGCGAGAGUGGUCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.