miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28415 3' -57.8 NC_005946.1 + 22674 0.66 0.744299
Target:  5'- aCGUG-AGGugcuCGGUgUACCugGCCAGAGa -3'
miRNA:   3'- aGCACgUCCu---GCCAgGUGG--UGGUCUC- -5'
28415 3' -57.8 NC_005946.1 + 70120 0.67 0.704449
Target:  5'- -gGUGguCAGGAgcUGGUCCAguggauUCACCAGAGu -3'
miRNA:   3'- agCAC--GUCCU--GCCAGGU------GGUGGUCUC- -5'
28415 3' -57.8 NC_005946.1 + 2309 0.68 0.64299
Target:  5'- cUCGUgaGCAGGguguccucggacGCGGaCC-CCGCCGGGGg -3'
miRNA:   3'- -AGCA--CGUCC------------UGCCaGGuGGUGGUCUC- -5'
28415 3' -57.8 NC_005946.1 + 60490 0.68 0.64299
Target:  5'- gUGgGCcGGAaaacCGGUCCccACCGCCGGAGa -3'
miRNA:   3'- aGCaCGuCCU----GCCAGG--UGGUGGUCUC- -5'
28415 3' -57.8 NC_005946.1 + 26560 0.68 0.632665
Target:  5'- aUUG-GCcugAGGGCaGGUcCCACCACCAGGu -3'
miRNA:   3'- -AGCaCG---UCCUG-CCA-GGUGGUGGUCUc -5'
28415 3' -57.8 NC_005946.1 + 77693 0.69 0.612023
Target:  5'- gCGUGCAGGGaGG-CCAuCCACCAa-- -3'
miRNA:   3'- aGCACGUCCUgCCaGGU-GGUGGUcuc -5'
28415 3' -57.8 NC_005946.1 + 41599 0.69 0.612023
Target:  5'- cCG-GCGGGACcagaaGGacccaccccUCCGCCGCCAGAc -3'
miRNA:   3'- aGCaCGUCCUG-----CC---------AGGUGGUGGUCUc -5'
28415 3' -57.8 NC_005946.1 + 60131 0.72 0.408525
Target:  5'- cCGUGguGGugGgGUCCACCGucccCCAGuAGu -3'
miRNA:   3'- aGCACguCCugC-CAGGUGGU----GGUC-UC- -5'
28415 3' -57.8 NC_005946.1 + 95123 0.73 0.372956
Target:  5'- gUCaUGCAGG-CGGUCCugaggaucgcucCCACCAGGGa -3'
miRNA:   3'- -AGcACGUCCuGCCAGGu-----------GGUGGUCUC- -5'
28415 3' -57.8 NC_005946.1 + 102299 0.74 0.342637
Target:  5'- cCGUGCAGGGCc--CCGCaCGCCAGGGc -3'
miRNA:   3'- aGCACGUCCUGccaGGUG-GUGGUCUC- -5'
28415 3' -57.8 NC_005946.1 + 73598 1.08 0.001617
Target:  5'- cUCGUGCAGGACGGUCCACCACCAGAGc -3'
miRNA:   3'- -AGCACGUCCUGCCAGGUGGUGGUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.