miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28415 5' -58.2 NC_005946.1 + 43061 0.66 0.755727
Target:  5'- gUCCUCAgggUGGGucucCAGCACaugauGUGUCCGUg -3'
miRNA:   3'- -AGGAGU---ACCUc---GUCGUG-----CGCAGGCGg -5'
28415 5' -58.2 NC_005946.1 + 42998 0.66 0.755727
Target:  5'- gCCUCGUGGc-CAGCcucuUGCGaCCGUCg -3'
miRNA:   3'- aGGAGUACCucGUCGu---GCGCaGGCGG- -5'
28415 5' -58.2 NC_005946.1 + 91753 0.66 0.736204
Target:  5'- -gCUgGUGGAcauGUGGCugGCGUuuGCg -3'
miRNA:   3'- agGAgUACCU---CGUCGugCGCAggCGg -5'
28415 5' -58.2 NC_005946.1 + 20782 0.67 0.674702
Target:  5'- -gCUCcUGGAGCaggccucGGC-CGUGUCCgGCCu -3'
miRNA:   3'- agGAGuACCUCG-------UCGuGCGCAGG-CGG- -5'
28415 5' -58.2 NC_005946.1 + 55829 0.67 0.665467
Target:  5'- gCCUCAUGGucagGGCcuucuuugACGCcUCCGCCa -3'
miRNA:   3'- aGGAGUACCucg-UCG--------UGCGcAGGCGG- -5'
28415 5' -58.2 NC_005946.1 + 73216 0.69 0.576974
Target:  5'- uUCCUCcUGGAcgggcuccugaaGCAGUACGUcaagcuguuuguaaaGUCCGCg -3'
miRNA:   3'- -AGGAGuACCU------------CGUCGUGCG---------------CAGGCGg -5'
28415 5' -58.2 NC_005946.1 + 16243 0.7 0.505877
Target:  5'- cCCUCuUGuGAGCAGCggcauggcccaggagACGguggcacCGUCCGCCa -3'
miRNA:   3'- aGGAGuAC-CUCGUCG---------------UGC-------GCAGGCGG- -5'
28415 5' -58.2 NC_005946.1 + 9598 0.71 0.427964
Target:  5'- gCCUCcaggaucuUGGAGCA-CAcCGCGUCgGCCa -3'
miRNA:   3'- aGGAGu-------ACCUCGUcGU-GCGCAGgCGG- -5'
28415 5' -58.2 NC_005946.1 + 36748 0.75 0.279496
Target:  5'- -aCUaaaGUGGuaugaggcgaAGCGGCGCGuCGUCCGCCa -3'
miRNA:   3'- agGAg--UACC----------UCGUCGUGC-GCAGGCGG- -5'
28415 5' -58.2 NC_005946.1 + 73561 1.11 0.000906
Target:  5'- cUCCUCAUGGAGCAGCACGCGUCCGCCc -3'
miRNA:   3'- -AGGAGUACCUCGUCGUGCGCAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.