Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28417 | 5' | -52.1 | NC_005946.1 | + | 74631 | 1.13 | 0.002465 |
Target: 5'- uCCCUGAUGGCCUUCAUCUGAGUGAGCc -3' miRNA: 3'- -GGGACUACCGGAAGUAGACUCACUCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 8028 | 0.71 | 0.764309 |
Target: 5'- aCCCUGAUGGCg--CAgg-GAucGUGAGCg -3' miRNA: 3'- -GGGACUACCGgaaGUagaCU--CACUCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 95724 | 0.69 | 0.871586 |
Target: 5'- cCCCUGAUGGCCcUC-UCUGcGGcuccgcUGuGCa -3' miRNA: 3'- -GGGACUACCGGaAGuAGAC-UC------ACuCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 26165 | 0.69 | 0.871586 |
Target: 5'- gCUCUGGUGagugaGCCUcUCGUCgGAG-GAGCa -3' miRNA: 3'- -GGGACUAC-----CGGA-AGUAGaCUCaCUCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 44538 | 0.67 | 0.936033 |
Target: 5'- gCCCUGgcGGUgUgaggCGUCUuGAGggGAGCc -3' miRNA: 3'- -GGGACuaCCGgAa---GUAGA-CUCa-CUCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 56090 | 0.67 | 0.945792 |
Target: 5'- gCCUUGAccaUGGCCcUCAggcUCUccaGGGUGAGg -3' miRNA: 3'- -GGGACU---ACCGGaAGU---AGA---CUCACUCg -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 27498 | 0.67 | 0.947619 |
Target: 5'- cCCCUGGccuUGGCCgcagUCAcggcguccaacugccUCaUGAG-GAGCc -3' miRNA: 3'- -GGGACU---ACCGGa---AGU---------------AG-ACUCaCUCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 15616 | 0.66 | 0.954518 |
Target: 5'- aCCgGA-GGCCUgag-CUGAG-GAGCg -3' miRNA: 3'- gGGaCUaCCGGAaguaGACUCaCUCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 71648 | 0.66 | 0.958502 |
Target: 5'- aCUCUGAUGGCaagaagcUCGUCaaGGUGAGg -3' miRNA: 3'- -GGGACUACCGga-----AGUAGacUCACUCg -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 12511 | 0.66 | 0.96224 |
Target: 5'- aUCCUGAUGGCCUgCGUUc-AGgccaGGGCc -3' miRNA: 3'- -GGGACUACCGGAaGUAGacUCa---CUCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 24470 | 0.66 | 0.965737 |
Target: 5'- gCCCUGAUguacuugaGGCCcgaacCGUCgaGAGUGaAGCc -3' miRNA: 3'- -GGGACUA--------CCGGaa---GUAGa-CUCAC-UCG- -5' |
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28417 | 5' | -52.1 | NC_005946.1 | + | 9718 | 0.66 | 0.969 |
Target: 5'- gCCCUGGacaugacGGCCauccugUUGUCggGGGUGAGUg -3' miRNA: 3'- -GGGACUa------CCGGa-----AGUAGa-CUCACUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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