miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28419 3' -55 NC_005946.1 + 56154 0.66 0.903711
Target:  5'- uGUCACuGGGG-CCu--CGGggaUGGCg -3'
miRNA:   3'- cCAGUGuCCCCaGGucuGCCaa-ACCG- -5'
28419 3' -55 NC_005946.1 + 85700 0.66 0.897188
Target:  5'- cGUCACAGGGuuacgCaCAGcUGGUUccgUGGCa -3'
miRNA:   3'- cCAGUGUCCCca---G-GUCuGCCAA---ACCG- -5'
28419 3' -55 NC_005946.1 + 48933 0.66 0.890425
Target:  5'- -cUCACGGGuccccuGGUCCAGuCGGauggaGGCg -3'
miRNA:   3'- ccAGUGUCC------CCAGGUCuGCCaaa--CCG- -5'
28419 3' -55 NC_005946.1 + 24707 0.67 0.868733
Target:  5'- cGGUUugGGGGGgUUGGGCccgGGUggGGCc -3'
miRNA:   3'- -CCAGugUCCCCaGGUCUG---CCAaaCCG- -5'
28419 3' -55 NC_005946.1 + 95800 0.67 0.868733
Target:  5'- -cUCACAGGGGaUgCAGACccagaGGUUUcGCa -3'
miRNA:   3'- ccAGUGUCCCC-AgGUCUG-----CCAAAcCG- -5'
28419 3' -55 NC_005946.1 + 102071 0.67 0.853155
Target:  5'- gGGUCcgucagGCuGGGGUCCAGGCccc-UGGUc -3'
miRNA:   3'- -CCAG------UGuCCCCAGGUCUGccaaACCG- -5'
28419 3' -55 NC_005946.1 + 69628 0.67 0.84505
Target:  5'- aGGUCAgccCAGGGGUCCcuguccuccaGGAgGGccUGaGCu -3'
miRNA:   3'- -CCAGU---GUCCCCAGG----------UCUgCCaaAC-CG- -5'
28419 3' -55 NC_005946.1 + 71164 0.67 0.836743
Target:  5'- cGUgGCGGGcaGGUCCAGGgaGGgg-GGCa -3'
miRNA:   3'- cCAgUGUCC--CCAGGUCUg-CCaaaCCG- -5'
28419 3' -55 NC_005946.1 + 94708 0.68 0.819556
Target:  5'- gGGUucCACGGGGGcCCucAGAggaGGaUUGGCg -3'
miRNA:   3'- -CCA--GUGUCCCCaGG--UCUg--CCaAACCG- -5'
28419 3' -55 NC_005946.1 + 59505 0.68 0.810691
Target:  5'- ---uGguGGGGUCCAGGCccgaGGccUUGGCg -3'
miRNA:   3'- ccagUguCCCCAGGUCUG----CCa-AACCG- -5'
28419 3' -55 NC_005946.1 + 16386 0.73 0.54853
Target:  5'- aGG-CGCAGGGG-CCAGGucuuUGGagUGGCg -3'
miRNA:   3'- -CCaGUGUCCCCaGGUCU----GCCaaACCG- -5'
28419 3' -55 NC_005946.1 + 102895 0.73 0.518229
Target:  5'- gGGagACAGGGGUCCAGAgGGa----- -3'
miRNA:   3'- -CCagUGUCCCCAGGUCUgCCaaaccg -5'
28419 3' -55 NC_005946.1 + 76433 1.13 0.00137
Target:  5'- cGGUCACAGGGGUCCAGACGGUUUGGCc -3'
miRNA:   3'- -CCAGUGUCCCCAGGUCUGCCAAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.