miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28419 5' -63.8 NC_005946.1 + 28583 0.66 0.509427
Target:  5'- gGGGCCgu--GGUgCCgGGAGUcacaaaGGUGGa -3'
miRNA:   3'- -CCCGGaucuCCGgGGgCCUCG------CCACC- -5'
28419 5' -63.8 NC_005946.1 + 21175 0.66 0.500095
Target:  5'- cGGGCUUcaAGAGGCUCCUGGgaaAGaCGGc-- -3'
miRNA:   3'- -CCCGGA--UCUCCGGGGGCC---UC-GCCacc -5'
28419 5' -63.8 NC_005946.1 + 82908 0.66 0.500095
Target:  5'- aGGCCUucAGGgCCCCGGAGCc---- -3'
miRNA:   3'- cCCGGAucUCCgGGGGCCUCGccacc -5'
28419 5' -63.8 NC_005946.1 + 4267 0.66 0.472575
Target:  5'- aGGCCgucGGGGGCuCCCaCGGAGUGa--- -3'
miRNA:   3'- cCCGGa--UCUCCG-GGG-GCCUCGCcacc -5'
28419 5' -63.8 NC_005946.1 + 27431 0.66 0.463572
Target:  5'- cGGCCgagauGAGGCUCCUGaGGuCGGUGc -3'
miRNA:   3'- cCCGGau---CUCCGGGGGCcUC-GCCACc -5'
28419 5' -63.8 NC_005946.1 + 71849 0.67 0.454659
Target:  5'- cGGCCaAGAGGCCCgCGGgccagaGGaCGGgaGGa -3'
miRNA:   3'- cCCGGaUCUCCGGGgGCC------UC-GCCa-CC- -5'
28419 5' -63.8 NC_005946.1 + 76732 0.67 0.454659
Target:  5'- cGGcGCaaAGGGGCCCCgcgggcgcaggCGGAGUccacguccaccuGGUGGg -3'
miRNA:   3'- -CC-CGgaUCUCCGGGG-----------GCCUCG------------CCACC- -5'
28419 5' -63.8 NC_005946.1 + 13347 0.67 0.423367
Target:  5'- gGGGCCUAcauaucccugcugcuGGGGUCCa--GGGUGGUGGc -3'
miRNA:   3'- -CCCGGAU---------------CUCCGGGggcCUCGCCACC- -5'
28419 5' -63.8 NC_005946.1 + 88653 0.67 0.414906
Target:  5'- -aGCCUAcucgaagacaccuuuGAGGCCUUCcugGGAGCGGUGu -3'
miRNA:   3'- ccCGGAU---------------CUCCGGGGG---CCUCGCCACc -5'
28419 5' -63.8 NC_005946.1 + 76577 0.67 0.411551
Target:  5'- cGGUCcGGucGGGCCCgUgGGAGCGGcUGGg -3'
miRNA:   3'- cCCGGaUC--UCCGGG-GgCCUCGCC-ACC- -5'
28419 5' -63.8 NC_005946.1 + 103078 0.67 0.411551
Target:  5'- aGGGuCCaAGGGGUCCCaaggguGGAGUGGgagccagGGg -3'
miRNA:   3'- -CCC-GGaUCUCCGGGGg-----CCUCGCCa------CC- -5'
28419 5' -63.8 NC_005946.1 + 19906 0.69 0.340695
Target:  5'- aGGGUCUccaAGAGGCCCgugCUGGAGCucaugccugaguGcGUGGa -3'
miRNA:   3'- -CCCGGA---UCUCCGGG---GGCCUCG------------C-CACC- -5'
28419 5' -63.8 NC_005946.1 + 48149 0.71 0.254699
Target:  5'- cGGGCaugUGGAGGCacuuUCUGGAGUaGGUGGg -3'
miRNA:   3'- -CCCGg--AUCUCCGg---GGGCCUCG-CCACC- -5'
28419 5' -63.8 NC_005946.1 + 76648 0.71 0.24888
Target:  5'- gGGGCCcAGGGGCCCaggGGAGCaGaGGg -3'
miRNA:   3'- -CCCGGaUCUCCGGGgg-CCUCGcCaCC- -5'
28419 5' -63.8 NC_005946.1 + 36287 0.71 0.24888
Target:  5'- aGGUCUGGAaggugugguGGgCUCCGGcGGCGGUGGc -3'
miRNA:   3'- cCCGGAUCU---------CCgGGGGCC-UCGCCACC- -5'
28419 5' -63.8 NC_005946.1 + 44313 0.77 0.090922
Target:  5'- aGGGCUgggUGGAGGCCCCUGuuuGCGGUGu -3'
miRNA:   3'- -CCCGG---AUCUCCGGGGGCcu-CGCCACc -5'
28419 5' -63.8 NC_005946.1 + 76398 1.11 0.000283
Target:  5'- gGGGCCUAGAGGCCCCCGGAGCGGUGGg -3'
miRNA:   3'- -CCCGGAUCUCCGGGGGCCUCGCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.