miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28424 5' -55.1 NC_005946.1 + 76882 0.66 0.891804
Target:  5'- cGAUCCcaaGCCUCcgccagaucccGCCCAUCcCCuGGACg -3'
miRNA:   3'- cCUAGG---UGGAG-----------UGGGUGGuGGuCUUG- -5'
28424 5' -55.1 NC_005946.1 + 35113 0.66 0.891804
Target:  5'- aGGAcguccaUCCACCUgucuagcuguccCuCCCACC-CCAGGAg -3'
miRNA:   3'- -CCU------AGGUGGA------------GuGGGUGGuGGUCUUg -5'
28424 5' -55.1 NC_005946.1 + 64249 0.66 0.884796
Target:  5'- aGAggCCGCCUgAgCCAUguCCAGGGCc -3'
miRNA:   3'- cCUa-GGUGGAgUgGGUGguGGUCUUG- -5'
28424 5' -55.1 NC_005946.1 + 102307 0.66 0.884796
Target:  5'- -cGUCCacGCCgugCAgggcCCCGCaCGCCAGGGCg -3'
miRNA:   3'- ccUAGG--UGGa--GU----GGGUG-GUGGUCUUG- -5'
28424 5' -55.1 NC_005946.1 + 13875 0.66 0.884796
Target:  5'- aGGGUgagCUACCUCAaa-GCCGCCAGGc- -3'
miRNA:   3'- -CCUA---GGUGGAGUgggUGGUGGUCUug -5'
28424 5' -55.1 NC_005946.1 + 19834 0.66 0.884796
Target:  5'- aGGAcCUAUCaCACCCugugGCC-CCAGGACa -3'
miRNA:   3'- -CCUaGGUGGaGUGGG----UGGuGGUCUUG- -5'
28424 5' -55.1 NC_005946.1 + 86457 0.66 0.877551
Target:  5'- ---gCCACCcCugCCGCC-CCAGAc- -3'
miRNA:   3'- ccuaGGUGGaGugGGUGGuGGUCUug -5'
28424 5' -55.1 NC_005946.1 + 44013 0.66 0.870074
Target:  5'- aGGAUCCccuCCUgACCUugCcuuGCCAGuaGGCa -3'
miRNA:   3'- -CCUAGGu--GGAgUGGGugG---UGGUC--UUG- -5'
28424 5' -55.1 NC_005946.1 + 83796 0.66 0.862371
Target:  5'- gGGGUagguCCUC-CCCACCGCCucucuacacuGAGCg -3'
miRNA:   3'- -CCUAggu-GGAGuGGGUGGUGGu---------CUUG- -5'
28424 5' -55.1 NC_005946.1 + 30476 0.66 0.854448
Target:  5'- cGGUUCAgCUCugCCGCCAgcCCGGucgcuGCg -3'
miRNA:   3'- cCUAGGUgGAGugGGUGGU--GGUCu----UG- -5'
28424 5' -55.1 NC_005946.1 + 43923 0.66 0.85203
Target:  5'- uGGGUCC-CCUCacgucgucccagugGCCCGCCACUc---- -3'
miRNA:   3'- -CCUAGGuGGAG--------------UGGGUGGUGGucuug -5'
28424 5' -55.1 NC_005946.1 + 8366 0.67 0.846313
Target:  5'- aGGGUCUugaGCCUgAgCUggGCCACCAGAc- -3'
miRNA:   3'- -CCUAGG---UGGAgUgGG--UGGUGGUCUug -5'
28424 5' -55.1 NC_005946.1 + 75173 0.67 0.846313
Target:  5'- gGGGUCCACCaC-CCCGgCACCG--ACg -3'
miRNA:   3'- -CCUAGGUGGaGuGGGUgGUGGUcuUG- -5'
28424 5' -55.1 NC_005946.1 + 56290 0.67 0.837971
Target:  5'- gGGAgacgUCgGCCUCugCCGCCGgguCCAuGGCa -3'
miRNA:   3'- -CCU----AGgUGGAGugGGUGGU---GGUcUUG- -5'
28424 5' -55.1 NC_005946.1 + 60484 0.67 0.837971
Target:  5'- cGGAaa-ACCggUC-CCCACCGCCGGAGa -3'
miRNA:   3'- -CCUaggUGG--AGuGGGUGGUGGUCUUg -5'
28424 5' -55.1 NC_005946.1 + 35556 0.67 0.818046
Target:  5'- cGGAcgCCAcguuccugccCCUCGCCCAggcccucgaguccuCCAgCCAGGACc -3'
miRNA:   3'- -CCUa-GGU----------GGAGUGGGU--------------GGU-GGUCUUG- -5'
28424 5' -55.1 NC_005946.1 + 10985 0.68 0.802705
Target:  5'- uGGUCC-CCUUugUCACCGCCAc--- -3'
miRNA:   3'- cCUAGGuGGAGugGGUGGUGGUcuug -5'
28424 5' -55.1 NC_005946.1 + 21104 0.68 0.793458
Target:  5'- aGGUCCAucggcgagguUCUC-CCCGCCACaGGGGCa -3'
miRNA:   3'- cCUAGGU----------GGAGuGGGUGGUGgUCUUG- -5'
28424 5' -55.1 NC_005946.1 + 63436 0.68 0.77451
Target:  5'- gGGAUCCugGCCaUACCCAgguCCACCAccACg -3'
miRNA:   3'- -CCUAGG--UGGaGUGGGU---GGUGGUcuUG- -5'
28424 5' -55.1 NC_005946.1 + 77752 0.68 0.77451
Target:  5'- uGGA-CCACCUCACCCAaguCUuUCGGuGCa -3'
miRNA:   3'- -CCUaGGUGGAGUGGGU---GGuGGUCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.