miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28426 3' -56.4 NC_005946.1 + 44810 0.66 0.851876
Target:  5'- aCGucCCGAGcAGGA-GGGCGcUGUUGGCg -3'
miRNA:   3'- aGCc-GGCUC-UCCUaCCUGC-ACAGUCG- -5'
28426 3' -56.4 NC_005946.1 + 34496 0.67 0.809608
Target:  5'- cCGGCgGGuAGGGUccugcccgaGGACGUGUaGGCg -3'
miRNA:   3'- aGCCGgCUcUCCUA---------CCUGCACAgUCG- -5'
28426 3' -56.4 NC_005946.1 + 73318 0.67 0.809608
Target:  5'- aUGGUCaAGAGGAUGG-CGgacgCGGCg -3'
miRNA:   3'- aGCCGGcUCUCCUACCuGCaca-GUCG- -5'
28426 3' -56.4 NC_005946.1 + 73654 0.67 0.791486
Target:  5'- aCGGCaaGGGAGGccGUGGccAUGUGUgGGCu -3'
miRNA:   3'- aGCCGg-CUCUCC--UACC--UGCACAgUCG- -5'
28426 3' -56.4 NC_005946.1 + 52258 0.67 0.785932
Target:  5'- gUCGGCCGGGAGaaaccucaucagGGACG-GUCAc- -3'
miRNA:   3'- -AGCCGGCUCUCcua---------CCUGCaCAGUcg -5'
28426 3' -56.4 NC_005946.1 + 19671 0.69 0.693541
Target:  5'- -aGGCCGAGAGGGccu-CGgGUCAGUu -3'
miRNA:   3'- agCCGGCUCUCCUaccuGCaCAGUCG- -5'
28426 3' -56.4 NC_005946.1 + 82533 0.69 0.673016
Target:  5'- cCGGg-GAGAGGcUGGAgGUGUCuGCg -3'
miRNA:   3'- aGCCggCUCUCCuACCUgCACAGuCG- -5'
28426 3' -56.4 NC_005946.1 + 29995 0.7 0.631626
Target:  5'- uUUGGCCGucAGGGUGGGCGUcaucuccugGUC-GCc -3'
miRNA:   3'- -AGCCGGCucUCCUACCUGCA---------CAGuCG- -5'
28426 3' -56.4 NC_005946.1 + 61382 0.7 0.621258
Target:  5'- aUGGCCGAGAcacuguccucuaGGuccgggaagaagGUGGACGUGUugcaCGGCu -3'
miRNA:   3'- aGCCGGCUCU------------CC------------UACCUGCACA----GUCG- -5'
28426 3' -56.4 NC_005946.1 + 13896 0.73 0.451886
Target:  5'- cUGGCCGAGAGGGUcagggGGAgG-GUgAGCu -3'
miRNA:   3'- aGCCGGCUCUCCUA-----CCUgCaCAgUCG- -5'
28426 3' -56.4 NC_005946.1 + 82442 1.12 0.001119
Target:  5'- cUCGGCCGAGAGGAUGGACGUGUCAGCg -3'
miRNA:   3'- -AGCCGGCUCUCCUACCUGCACAGUCG- -5'
28426 3' -56.4 NC_005946.1 + 82349 1.12 0.001119
Target:  5'- cUCGGCCGAGAGGAUGGACGUGUCAGCg -3'
miRNA:   3'- -AGCCGGCUCUCCUACCUGCACAGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.