miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28426 5' -57.7 NC_005946.1 + 63274 0.66 0.780579
Target:  5'- uGAGCgGcGGCGGCCGCCgCaaaGGUCuGAUAg -3'
miRNA:   3'- -CUUGaC-CUGCCGGUGG-Gg--CCAG-UUGU- -5'
28426 5' -57.7 NC_005946.1 + 40285 0.66 0.771125
Target:  5'- cGGGCUcGGACGGCCugacggccuCUCCGG-CAAa- -3'
miRNA:   3'- -CUUGA-CCUGCCGGu--------GGGGCCaGUUgu -5'
28426 5' -57.7 NC_005946.1 + 80565 0.66 0.751844
Target:  5'- aGAAC-GucCGGCCAUCCCGGggcacuuguggCAGCAc -3'
miRNA:   3'- -CUUGaCcuGCCGGUGGGGCCa----------GUUGU- -5'
28426 5' -57.7 NC_005946.1 + 12405 0.66 0.751844
Target:  5'- cGGGCUGGACcguguGGCucCACgCCCGGggAGCAa -3'
miRNA:   3'- -CUUGACCUG-----CCG--GUG-GGGCCagUUGU- -5'
28426 5' -57.7 NC_005946.1 + 24802 0.66 0.742035
Target:  5'- -uACUGGACGGUCugACuCCCaGUCAGg- -3'
miRNA:   3'- cuUGACCUGCCGG--UG-GGGcCAGUUgu -5'
28426 5' -57.7 NC_005946.1 + 9726 0.67 0.722133
Target:  5'- uGGACUGGgcccuggacaugACGGCCAUCCUGuuGUCGGgGg -3'
miRNA:   3'- -CUUGACC------------UGCCGGUGGGGC--CAGUUgU- -5'
28426 5' -57.7 NC_005946.1 + 83537 0.67 0.712058
Target:  5'- cGAGCUcGA-GGaCUACCCCGG-CAGCAu -3'
miRNA:   3'- -CUUGAcCUgCC-GGUGGGGCCaGUUGU- -5'
28426 5' -57.7 NC_005946.1 + 4337 0.68 0.619348
Target:  5'- --gUUGGAgGGCCACCCCGcGUgGu-- -3'
miRNA:   3'- cuuGACCUgCCGGUGGGGC-CAgUugu -5'
28426 5' -57.7 NC_005946.1 + 75373 0.69 0.598638
Target:  5'- ----aGGGCGGaaugccaguuacCCACCCCGGUgGACc -3'
miRNA:   3'- cuugaCCUGCC------------GGUGGGGCCAgUUGu -5'
28426 5' -57.7 NC_005946.1 + 20710 0.69 0.557578
Target:  5'- --cCUGGcCGGCCucgagGCCCUGGUC-GCAa -3'
miRNA:   3'- cuuGACCuGCCGG-----UGGGGCCAGuUGU- -5'
28426 5' -57.7 NC_005946.1 + 61468 0.7 0.547429
Target:  5'- ----gGGAC-GCCGCCCUGGcCGACAg -3'
miRNA:   3'- cuugaCCUGcCGGUGGGGCCaGUUGU- -5'
28426 5' -57.7 NC_005946.1 + 48026 0.7 0.517359
Target:  5'- uGGgUGGGCGGCCuCCuuGG-CGACAg -3'
miRNA:   3'- cUUgACCUGCCGGuGGggCCaGUUGU- -5'
28426 5' -57.7 NC_005946.1 + 44876 0.71 0.468823
Target:  5'- --cCUGGugGGaacCCACCCUGGUCcugugGACAu -3'
miRNA:   3'- cuuGACCugCC---GGUGGGGCCAG-----UUGU- -5'
28426 5' -57.7 NC_005946.1 + 82305 1.08 0.001511
Target:  5'- gGAACUGGACGGCCACCCCGGUCAACAg -3'
miRNA:   3'- -CUUGACCUGCCGGUGGGGCCAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.