miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28427 5' -61.8 NC_005946.1 + 56394 0.66 0.565391
Target:  5'- cACCA-GGcCGUCUgugaCGGCCGAGuccAGGAg -3'
miRNA:   3'- -UGGUgCC-GCAGGa---GCCGGCUC---UCCUa -5'
28427 5' -61.8 NC_005946.1 + 66627 0.66 0.545563
Target:  5'- gGCUACGGCuccgacGUCCUCGcguuGCCaGAGAcGGAc -3'
miRNA:   3'- -UGGUGCCG------CAGGAGC----CGG-CUCU-CCUa -5'
28427 5' -61.8 NC_005946.1 + 49428 0.67 0.487618
Target:  5'- gGCCcuggaggggACGGgGUCCUCGuagaCGGGAGGAc -3'
miRNA:   3'- -UGG---------UGCCgCAGGAGCcg--GCUCUCCUa -5'
28427 5' -61.8 NC_005946.1 + 12714 0.68 0.441638
Target:  5'- cCUACGGU-UCCUCGGagGAGGGGAg -3'
miRNA:   3'- uGGUGCCGcAGGAGCCggCUCUCCUa -5'
28427 5' -61.8 NC_005946.1 + 97895 0.68 0.415257
Target:  5'- aACCA-GGU--UCUUGGCCGGGAGGAc -3'
miRNA:   3'- -UGGUgCCGcaGGAGCCGGCUCUCCUa -5'
28427 5' -61.8 NC_005946.1 + 57904 0.68 0.415257
Target:  5'- uGCCAgGGCccUgUUGGCCGGGGGGGa -3'
miRNA:   3'- -UGGUgCCGcaGgAGCCGGCUCUCCUa -5'
28427 5' -61.8 NC_005946.1 + 79932 0.68 0.40668
Target:  5'- cGCCGaGGCGcCCaCGGCgGGGGGGAc -3'
miRNA:   3'- -UGGUgCCGCaGGaGCCGgCUCUCCUa -5'
28427 5' -61.8 NC_005946.1 + 44395 0.7 0.349867
Target:  5'- cACUGCGGUucuGUCUgCGGCCGuGGGGAg -3'
miRNA:   3'- -UGGUGCCG---CAGGaGCCGGCuCUCCUa -5'
28427 5' -61.8 NC_005946.1 + 104383 0.72 0.247979
Target:  5'- cCCACGGCGUCCgcggCGGCCcucAGGGc -3'
miRNA:   3'- uGGUGCCGCAGGa---GCCGGcucUCCUa -5'
28427 5' -61.8 NC_005946.1 + 67720 0.75 0.167657
Target:  5'- cACCACGGUGaCCUCgGGCUGAG-GGAc -3'
miRNA:   3'- -UGGUGCCGCaGGAG-CCGGCUCuCCUa -5'
28427 5' -61.8 NC_005946.1 + 82454 1.05 0.00104
Target:  5'- uACCACGGCGUCCUCGGCCGAGAGGAUg -3'
miRNA:   3'- -UGGUGCCGCAGGAGCCGGCUCUCCUA- -5'
28427 5' -61.8 NC_005946.1 + 82361 1.05 0.00104
Target:  5'- uACCACGGCGUCCUCGGCCGAGAGGAUg -3'
miRNA:   3'- -UGGUGCCGCAGGAGCCGGCUCUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.