miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28428 5' -58.7 NC_005946.1 + 34562 0.66 0.74705
Target:  5'- gCCAGgGccuUCCUGuCCCUcCAGGCCgGc -3'
miRNA:   3'- gGGUUgC---AGGAC-GGGAaGUCCGGgCu -5'
28428 5' -58.7 NC_005946.1 + 40105 0.66 0.74705
Target:  5'- gCCUGACGgggacCCUGCCguacuCUUUGGGCUCGu -3'
miRNA:   3'- -GGGUUGCa----GGACGG-----GAAGUCCGGGCu -5'
28428 5' -58.7 NC_005946.1 + 28912 0.66 0.74705
Target:  5'- aCUUGACGaCCUGCCCUUUcGGUCUc- -3'
miRNA:   3'- -GGGUUGCaGGACGGGAAGuCCGGGcu -5'
28428 5' -58.7 NC_005946.1 + 35985 0.66 0.73733
Target:  5'- cCUCGGCGUCCaugucagGCCuCUUUAcGCCCGc -3'
miRNA:   3'- -GGGUUGCAGGa------CGG-GAAGUcCGGGCu -5'
28428 5' -58.7 NC_005946.1 + 97873 0.66 0.73733
Target:  5'- aCCCuggcucCGUCCUGgCCUgu-GGCCgGGg -3'
miRNA:   3'- -GGGuu----GCAGGACgGGAaguCCGGgCU- -5'
28428 5' -58.7 NC_005946.1 + 94819 0.67 0.65704
Target:  5'- cCCCAGCGUCCgcaaCCC--CAGGCugaauauacCCGAg -3'
miRNA:   3'- -GGGUUGCAGGac--GGGaaGUCCG---------GGCU- -5'
28428 5' -58.7 NC_005946.1 + 71312 0.69 0.545273
Target:  5'- -aCAGCGUCCU-CCacUCGGGCUCGAc -3'
miRNA:   3'- ggGUUGCAGGAcGGgaAGUCCGGGCU- -5'
28428 5' -58.7 NC_005946.1 + 76361 0.69 0.535335
Target:  5'- uCCCAGCGgggcgCCUGgaUCUcaGGGCCCGGa -3'
miRNA:   3'- -GGGUUGCa----GGACg-GGAagUCCGGGCU- -5'
28428 5' -58.7 NC_005946.1 + 61454 0.69 0.525462
Target:  5'- gCCGACaggaUGCUCcUCAGGCCCGAc -3'
miRNA:   3'- gGGUUGcaggACGGGaAGUCCGGGCU- -5'
28428 5' -58.7 NC_005946.1 + 67385 0.69 0.525462
Target:  5'- cCCUAAaGUCCUgcaggGCCCUggUCAcGGCCUGAc -3'
miRNA:   3'- -GGGUUgCAGGA-----CGGGA--AGU-CCGGGCU- -5'
28428 5' -58.7 NC_005946.1 + 69622 0.7 0.505929
Target:  5'- gCCCAGgGgucCCUGUCCUccaggaGGGCCUGAg -3'
miRNA:   3'- -GGGUUgCa--GGACGGGAag----UCCGGGCU- -5'
28428 5' -58.7 NC_005946.1 + 34498 0.7 0.504961
Target:  5'- cCCCGGCGgguagggUCCUGCCCgaggacgugUAGGCgUGAg -3'
miRNA:   3'- -GGGUUGC-------AGGACGGGaa-------GUCCGgGCU- -5'
28428 5' -58.7 NC_005946.1 + 64684 0.7 0.486714
Target:  5'- gUCCAGC--CCUGCCCgUCGGGCCa-- -3'
miRNA:   3'- -GGGUUGcaGGACGGGaAGUCCGGgcu -5'
28428 5' -58.7 NC_005946.1 + 35551 0.7 0.477237
Target:  5'- gCC-ACGuUCCUGCCCcucgccCAGGCCCu- -3'
miRNA:   3'- gGGuUGC-AGGACGGGaa----GUCCGGGcu -5'
28428 5' -58.7 NC_005946.1 + 104384 0.72 0.388062
Target:  5'- uCCCAcgGCGUCCgcggcgGCCC-UCAGGgCCa- -3'
miRNA:   3'- -GGGU--UGCAGGa-----CGGGaAGUCCgGGcu -5'
28428 5' -58.7 NC_005946.1 + 61857 0.73 0.340077
Target:  5'- uCCCGACGcCCUGCCCagggaccuguaUgugaCGGGUCCGGc -3'
miRNA:   3'- -GGGUUGCaGGACGGG-----------Aa---GUCCGGGCU- -5'
28428 5' -58.7 NC_005946.1 + 67506 0.73 0.332509
Target:  5'- aCCAggACGUCUgagGCCUUUCGGGCgUCGAa -3'
miRNA:   3'- gGGU--UGCAGGa--CGGGAAGUCCG-GGCU- -5'
28428 5' -58.7 NC_005946.1 + 34668 0.74 0.276448
Target:  5'- gCCC-ACGUCC-GCCaggUCGGGCCUGGa -3'
miRNA:   3'- -GGGuUGCAGGaCGGga-AGUCCGGGCU- -5'
28428 5' -58.7 NC_005946.1 + 82496 0.79 0.134484
Target:  5'- --aAACGUCCUuCCCUUCAGGCCCa- -3'
miRNA:   3'- gggUUGCAGGAcGGGAAGUCCGGGcu -5'
28428 5' -58.7 NC_005946.1 + 82403 0.86 0.051676
Target:  5'- --aAACGUCCUuCCCUUCAGGCCCGAg -3'
miRNA:   3'- gggUUGCAGGAcGGGAAGUCCGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.