Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 22413 | 0.66 | 0.803969 |
|
Target: 5'- aCGGGCuAGCCUCCGCGgccuCuGCcGGu -3' miRNA: 3'- -GCCCG-UUGGAGGUGCacauGcCGuCC- -5' |
|||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 80324 | 0.67 | 0.757413 |
|
Target: 5'- aCGGGCAucccucccuCUUCCGCGUGccaguCGGaAGGa -3' miRNA: 3'- -GCCCGUu--------GGAGGUGCACau---GCCgUCC- -5' |
|||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 73648 | 0.68 | 0.728057 |
|
Target: 5'- aGGGaGGCCguggCCAUGUGUG-GGCuGGg -3' miRNA: 3'- gCCCgUUGGa---GGUGCACAUgCCGuCC- -5' |
|||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 36485 | 0.68 | 0.70805 |
|
Target: 5'- uGGGgAACuCUCCGgGgGUccuggucccaaACGGCAGGg -3' miRNA: 3'- gCCCgUUG-GAGGUgCaCA-----------UGCCGUCC- -5' |
|||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 79645 | 0.69 | 0.636447 |
|
Target: 5'- uGGGCGaucuugGCCUcCCACGUGUAgGaGCucuGGc -3' miRNA: 3'- gCCCGU------UGGA-GGUGCACAUgC-CGu--CC- -5' |
|||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 62776 | 0.71 | 0.534433 |
|
Target: 5'- aGGGCAGCCuUCCACGcGUugGuGUAa- -3' miRNA: 3'- gCCCGUUGG-AGGUGCaCAugC-CGUcc -5' |
|||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 29765 | 0.74 | 0.364853 |
|
Target: 5'- uGGGCcacaguuuguaucccAGCCUCCugGUGacagagGCGGuCAGGg -3' miRNA: 3'- gCCCG---------------UUGGAGGugCACa-----UGCC-GUCC- -5' |
|||||||
| 28429 | 3' | -56.9 | NC_005946.1 | + | 82822 | 1.11 | 0.001246 |
|
Target: 5'- cCGGGCAACCUCCACGUGUACGGCAGGg -3' miRNA: 3'- -GCCCGUUGGAGGUGCACAUGCCGUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home