miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28430 3' -65.2 NC_005946.1 + 76374 0.66 0.421721
Target:  5'- -uGGGUCCaa--CCGGUCCCaGCGGGg -3'
miRNA:   3'- uuCCUAGGgggaGGUCGGGGcCGCCC- -5'
28430 3' -65.2 NC_005946.1 + 49438 0.66 0.421721
Target:  5'- ------aCCCCUCCagGGCCCUGGaGGGg -3'
miRNA:   3'- uuccuagGGGGAGG--UCGGGGCCgCCC- -5'
28430 3' -65.2 NC_005946.1 + 44239 0.66 0.4049
Target:  5'- uAGGAUCCUCUcCCAGagcuCCCUGGCGc- -3'
miRNA:   3'- uUCCUAGGGGGaGGUC----GGGGCCGCcc -5'
28430 3' -65.2 NC_005946.1 + 72533 0.66 0.380478
Target:  5'- aGGGGGUCCggauacgacaguCCC-CCGGCCCCcgaGGagaGGGa -3'
miRNA:   3'- -UUCCUAGG------------GGGaGGUCGGGG---CCg--CCC- -5'
28430 3' -65.2 NC_005946.1 + 49603 0.67 0.364753
Target:  5'- uGGGGUuaaagaccuucaUCCCgUCCagGGCCCCGG-GGGa -3'
miRNA:   3'- uUCCUA------------GGGGgAGG--UCGGGGCCgCCC- -5'
28430 3' -65.2 NC_005946.1 + 59902 0.67 0.364753
Target:  5'- aAGGGAggugcagagUCCCCgaccCCGGCCCaCGacGCGGGa -3'
miRNA:   3'- -UUCCUa--------GGGGGa---GGUCGGG-GC--CGCCC- -5'
28430 3' -65.2 NC_005946.1 + 59942 0.67 0.356297
Target:  5'- -cGGAUCUCCCUU--GCCCUGGUagaggccGGGa -3'
miRNA:   3'- uuCCUAGGGGGAGguCGGGGCCG-------CCC- -5'
28430 3' -65.2 NC_005946.1 + 79956 0.69 0.257923
Target:  5'- uAGGGAUCUUCUggcCCAucuggacgccgaggcGCCCaCGGCGGGg -3'
miRNA:   3'- -UUCCUAGGGGGa--GGU---------------CGGG-GCCGCCC- -5'
28430 3' -65.2 NC_005946.1 + 34869 0.71 0.187844
Target:  5'- cAGGGAcaggUCCCUggCCAGCCUgaaGGCGGGa -3'
miRNA:   3'- -UUCCU----AGGGGgaGGUCGGGg--CCGCCC- -5'
28430 3' -65.2 NC_005946.1 + 34385 0.74 0.117359
Target:  5'- uGAGGG-CCCCCUCUcGCCCaCGGUucGGGg -3'
miRNA:   3'- -UUCCUaGGGGGAGGuCGGG-GCCG--CCC- -5'
28430 3' -65.2 NC_005946.1 + 73923 0.76 0.080023
Target:  5'- cGGGAgagUgCCCCUCCGaCCCCGGCGGa -3'
miRNA:   3'- uUCCU---AgGGGGAGGUcGGGGCCGCCc -5'
28430 3' -65.2 NC_005946.1 + 82963 0.96 0.002461
Target:  5'- uAAGGAUCCCCCU-CAGCCCCGGCGGGg -3'
miRNA:   3'- -UUCCUAGGGGGAgGUCGGGGCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.