miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28430 5' -58.7 NC_005946.1 + 61336 0.66 0.675881
Target:  5'- uGCacgGCUCCAaggaugaguGGgACAGGGAcGCCUg -3'
miRNA:   3'- gCGaa-UGAGGU---------CCgUGUCCCUcCGGA- -5'
28430 5' -58.7 NC_005946.1 + 14662 0.66 0.675881
Target:  5'- aGCUgUACcCCuGGCucaGCcggGGGGAGGCCg -3'
miRNA:   3'- gCGA-AUGaGGuCCG---UG---UCCCUCCGGa -5'
28430 5' -58.7 NC_005946.1 + 16409 0.67 0.64479
Target:  5'- aGaugUGCUCCuguugcaucaagAGGCGCAGGGgccAGGUCUu -3'
miRNA:   3'- gCga-AUGAGG------------UCCGUGUCCC---UCCGGA- -5'
28430 5' -58.7 NC_005946.1 + 61129 0.67 0.634394
Target:  5'- aGC--AUUCCAaGaACAGGGAGGCCg -3'
miRNA:   3'- gCGaaUGAGGUcCgUGUCCCUCCGGa -5'
28430 5' -58.7 NC_005946.1 + 77707 0.67 0.634394
Target:  5'- uGCUcaccaGCUuuGcGUGCAGGGAGGCCa -3'
miRNA:   3'- gCGAa----UGAggUcCGUGUCCCUCCGGa -5'
28430 5' -58.7 NC_005946.1 + 94332 0.67 0.623996
Target:  5'- aCGCUccACcaaaUCAGGCugAGGGAGGgCa -3'
miRNA:   3'- -GCGAa-UGa---GGUCCGugUCCCUCCgGa -5'
28430 5' -58.7 NC_005946.1 + 40142 0.68 0.562014
Target:  5'- gGCUggagagGCUCUccggcGGGCauaaACAGaGGGGGCCUg -3'
miRNA:   3'- gCGAa-----UGAGG-----UCCG----UGUC-CCUCCGGA- -5'
28430 5' -58.7 NC_005946.1 + 44320 0.68 0.541682
Target:  5'- gCGCUUGa---GGGCugGGuGGAGGCCc -3'
miRNA:   3'- -GCGAAUgaggUCCGugUC-CCUCCGGa -5'
28430 5' -58.7 NC_005946.1 + 48073 0.69 0.520604
Target:  5'- uGCUUugUCCccgguggguucggGGGCuuuggauuuuCuGGGAGGCCUg -3'
miRNA:   3'- gCGAAugAGG-------------UCCGu---------GuCCCUCCGGA- -5'
28430 5' -58.7 NC_005946.1 + 35330 0.7 0.444613
Target:  5'- aGCgu-CUcCCAGGUcccauccCAGGGAGGCCg -3'
miRNA:   3'- gCGaauGA-GGUCCGu------GUCCCUCCGGa -5'
28430 5' -58.7 NC_005946.1 + 3300 0.7 0.435435
Target:  5'- gGCgcACUCCAGGCuCAGGccaucggcaguGAGGCUg -3'
miRNA:   3'- gCGaaUGAGGUCCGuGUCC-----------CUCCGGa -5'
28430 5' -58.7 NC_005946.1 + 28663 0.7 0.426368
Target:  5'- -------aCCAGGC-CAGGGGGGCCg -3'
miRNA:   3'- gcgaaugaGGUCCGuGUCCCUCCGGa -5'
28430 5' -58.7 NC_005946.1 + 12759 0.75 0.228245
Target:  5'- gCGCUgUGCUCaGGGCGgAGGGAGGCa- -3'
miRNA:   3'- -GCGA-AUGAGgUCCGUgUCCCUCCGga -5'
28430 5' -58.7 NC_005946.1 + 82929 1.07 0.001204
Target:  5'- aCGCUUACUCCAGGCACAGGGAGGCCUu -3'
miRNA:   3'- -GCGAAUGAGGUCCGUGUCCCUCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.